PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g008000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 381aa MW: 43266.6 Da PI: 6.3492 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164 | 5.6e-51 | 52 | 177 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ Csa04g008000.1 52 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSET 145 79***************************.89***************888889****************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg++t+W+m+eyrl Csa04g008000.1 146 SRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 177 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 56.272 | 51 | 198 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.81E-57 | 51 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-25 | 53 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAIVSSTTSI IPMSNQVNNN EKGIEEDDHR GGHESNVQND DEADDHDHDM VMPGFRFHPT 60 EEELIEFYLR RKVEGKRFNV ELITFLDLYR YDPWELPAMA AIGEKEWYFY VPRDRKYRNG 120 DRPNRVTTSG YWKATGADRM IRSETSRPIG LKKTLVFYSG KAPKGTRTSW IMNEYRLPHH 180 ETEKYQKAEI SLCRVYKRPG VEDHPSLPRS LSTRHHNNHN SSSRQALRQQ QHHSSSSNHS 240 ENNLNNNTNN INNLEKLSTE YSGDGSTTTT TNSNSDVTIA LANQNIYRPM SYGASNNTSI 300 ISTSNQEDDE AAIVDDLQRL VNYQIPDGAT TAAALTPQTQ ATLAMSMIPT GTIPNSALWD 360 MWNPIIPDGN RDHYTNNPFK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-57 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-57 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-57 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-57 | 42 | 198 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-57 | 42 | 198 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-57 | 42 | 198 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g008000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT000874 | 0.0 | BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010502260.1 | 0.0 | PREDICTED: NAC domain-containing protein 35 isoform X2 | ||||
Swissprot | Q9ZVP8 | 0.0 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | D7LQ36 | 0.0 | D7LQ36_ARALL; ANAC034/ANAC035 | ||||
STRING | XP_010502259.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5436 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 0.0 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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