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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa04g005360.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
BBR-BPC |
| Protein Properties |
Length: 289aa MW: 32137.6 Da PI: 10.2869 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa04g005360.1 | genome | CSGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 363.6 | 3.9e-111 | 1 | 288 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnkllal 84
mdddg+ rn+gyyepa a++k nlglqlms+i +r++k+ re+nl ++++++++++r+ m++ +++++ ++dnk++++
Csa04g005360.1 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRESNL-MIGSNGSYHPREheasmpMNY----SWINQ------PKDNKFFNM 81
99**99..9*******999**************.9**************.************998888888....*****......********* PP
GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174
l++++ p++++v+s+t+ +s+q++++ +++e+++++ + + + +++ ++++ k++k++ + ++++ pk+kk +k+k++s
Csa04g005360.1 82 LPIST------PNYSNVMSETSGSNSMQMMHQsvvttSRFEENPIQPPPS---REDETV-QQPSGKKRKMRGSMATPTAPKAKKPRKPKEES--- 163
**766......9999**************988444444444444442222...222222.24556666666666777777777777777733... PP
GAGA_bind 175 kkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklL 269
v+++ +++r+k +kks+d+v+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+L
Csa04g005360.1 164 --GVTNNVQQQRVKPPKKSVDVVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVL 256
..44455555789********************************************************************************** PP
GAGA_bind 270 ekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
ekLa+eGy+++n++DLk+hWA+HGtnkfvtir
Csa04g005360.1 257 EKLATEGYSFGNAIDLKSHWARHGTNKFVTIR 288
*******************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRESNLMIGS NGSYHPREHE 60
ASMPMNYSWI NQPKDNKFFN MLPISTPNYS NVMSETSGSN SMQMMHQSVV TTSRFEENPI 120
QPPPSREDET VQQPSGKKRK MRGSMATPTA PKAKKPRKPK EESGVTNNVQ QQRVKPPKKS 180
VDVVINGVSM DISGLPVPVC TCTGTPQQCY RWGCGGWQSA CCTTNISMYP LPMSTKRRGA 240
RISGRKMSQG AFKKVLEKLA TEGYSFGNAI DLKSHWARHG TNKFVTIR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
