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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Csa04g004300.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
BBR-BPC |
| Protein Properties |
Length: 287aa MW: 31886.3 Da PI: 10.2869 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa04g004300.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 361.4 | 1.8e-110 | 1 | 286 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnkllal 84
mdddg+ rn+gyyepa a++k nlglqlms+i +r++k+ re+nl ++++++++++r+ +++ +++++ ++dnk++++
Csa04g004300.1 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRESNL-MIGSNGSYHPREheasmpINY----SWINQ------PKDNKFFNM 81
99**99..9*******999**************.9**************.***********9886655555....9****......********* PP
GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174
l++++ p++++v+s+t+ +s+q++++ +++e+++++ + ++++ +++ k++k++ + ++++ pk+kk +k+k++s
Csa04g004300.1 82 LPIST------PNYSNVMSETSGSNSMQMMHQsvvttSRFEENPIP-----PPREDETVQ-QPSGKKRKMRGSIATPTAPKAKKPRKPKEES--- 161
**766......8999**************99844444455555554.....333333333.4567778888888889999999999888844... PP
GAGA_bind 175 kkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklL 269
v+++ +++r+k +kks+d+v+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+L
Csa04g004300.1 162 --GVTNNVQQQRVKPPKKSVDVVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVL 254
..34444445789********************************************************************************** PP
GAGA_bind 270 ekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
ekLa+eGy+++n++DLk+hWA+HGtnkfvtir
Csa04g004300.1 255 EKLATEGYSFGNAIDLKSHWARHGTNKFVTIR 286
*******************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRESNLMIGS NGSYHPREHE 60
ASMPINYSWI NQPKDNKFFN MLPISTPNYS NVMSETSGSN SMQMMHQSVV TTSRFEENPI 120
PPPREDETVQ QPSGKKRKMR GSIATPTAPK AKKPRKPKEE SGVTNNVQQQ RVKPPKKSVD 180
VVINGVSMDI SGLPVPVCTC TGTPQQCYRW GCGGWQSACC TTNISMYPLP MSTKRRGARI 240
SGRKMSQGAF KKVLEKLATE GYSFGNAIDL KSHWARHGTN KFVTIR*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
