PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04655s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 160aa MW: 17912.7 Da PI: 4.5265 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 51.2 | 5e-16 | 1 | 115 | 31 | 99 |
TCP 31 rfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssaseceaesssssasnsssg............ 88 ++F L+deLGf +d++t+ WLl++a+pai ++tg + Csa04655s010.1 1 QLFNLTDELGFQTDGETVGWLLRNAEPAIFAATGHgvsttpndvihssnnnfhnyysncnN---------------------Ytihgncsytidg 74 68*********************************77544444444444444444333330.....................0344444444445 PP TCP 89 ..............................kaaksaakskk 99 + k++ + + Csa04655s010.1 75 dnwtgvntvhhemvfpvsimkehaasscfpVKDKEDVSDMS 115 55555555554444444333333333333322222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.945 | 1 | 32 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.7E-13 | 1 | 108 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
QLFNLTDELG FQTDGETVGW LLRNAEPAIF AATGHGVSTT PNDVIHSSNN NFHNYYSNCN 60 NYTIHGNCSY TIDGDNWTGV NTVHHEMVFP VSIMKEHAAS SCFPVKDKED VSDMSSQTQP 120 AMLPPLIHHQ QQQEQEPQPQ FELGKVEMAA DEKRYVWSE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04655s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495849.1 | 1e-119 | PREDICTED: transcription factor TCP16-like | ||||
Swissprot | Q9M1U4 | 2e-27 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | D7LNL8 | 1e-40 | D7LNL8_ARALL; Uncharacterized protein | ||||
STRING | XP_010495849.1 | 1e-118 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15750 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 1e-28 | TCP domain protein 16 |
Publications ? help Back to Top | |||
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