PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g062870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 304aa    MW: 35054.2 Da    PI: 5.4798
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g062870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.51.8e-5551321128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv +yL +kv+g+ +el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd+++ 
  Csa03g062870.1   5 LPPGFRFHPTDEELVAYYLDRKVNGRAIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRTIE 98 
                     79****************************.99**************95334455788************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl
  Csa03g062870.1  99 S-KKIKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 132
                     9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-633152IPR003441NAC domain
PROSITE profilePS5100559.7475152IPR003441NAC domain
PfamPF023653.9E-296132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAPSLPPGFR FHPTDEELVA YYLDRKVNGR AIELEIIPEV DLYKCEPWDL PEKSFLPGND  60
MEWYFYSTRD KKYPNGSRTN RATRAGYWKA TGKDRTIESK KIKMGMKKTL VYYRGRAPHG  120
LRTNWVMHEY RLTNTPSSSL KESYALCRVF KKNIQIPKRK GEEEDAEEES TSIGKYEEEE  180
KEIKRWRKFD GNIEDESLKR ASAETSSSEL TQGVLVDEAN SSSIFALHFS SSLLDDHDTL  240
LSNYTHQHEL PYHPPLQLQD FPQLSMNEAD IMSSIQQDFQ CRDSMNGTLD EIFFSSATFP  300
ASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-54415316166NO APICAL MERISTEM PROTEIN
1ut4_B2e-54415316166NO APICAL MERISTEM PROTEIN
1ut7_A2e-54415316166NO APICAL MERISTEM PROTEIN
1ut7_B2e-54415316166NO APICAL MERISTEM PROTEIN
3swm_A3e-54415319169NAC domain-containing protein 19
3swm_B3e-54415319169NAC domain-containing protein 19
3swm_C3e-54415319169NAC domain-containing protein 19
3swm_D3e-54415319169NAC domain-containing protein 19
3swp_A3e-54415319169NAC domain-containing protein 19
3swp_B3e-54415319169NAC domain-containing protein 19
3swp_C3e-54415319169NAC domain-containing protein 19
3swp_D3e-54415319169NAC domain-containing protein 19
4dul_A2e-54415316166NAC domain-containing protein 19
4dul_B2e-54415316166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g062870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1762780.0AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.
GenBankBT0104460.0BT010446.1 Arabidopsis thaliana At1g54330 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501258.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI56e-79NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A178WA620.0A0A178WA62_ARATH; NAC020
TrEMBLQ67Z400.0Q67Z40_ARATH; NAC domain containing protein 20
STRINGXP_010501258.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-170NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]