PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa03g061220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 37794.6 Da PI: 4.9564 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.7e-20 | 128 | 177 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp+e +r++lg+f taeeAa+a++aa+++++g Csa03g061220.1 128 QYRGIRQRP-WGKWAAEIRDPRE---GARIWLGTFKTAEEAARAYDAAARRIRG 177 69*******.**********965...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.8E-39 | 128 | 191 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 128 | 186 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.395 | 128 | 185 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.49E-17 | 128 | 186 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.5E-33 | 128 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-13 | 129 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 151 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MCGGAIISDF IPPPRSRRVT SEFIWPDLKK SAKAAKKSSK KRSNFFDLDD EFEADFQGFK 60 DDSSIDCDDD DDFDVGDVFA DVKPFVFGST PKPAVSSAAT AAAEASAFGK KVAGGEAEKS 120 GKRKRKNQYR GIRQRPWGKW AAEIRDPREG ARIWLGTFKT AEEAARAYDA AARRIRGSKA 180 KVNFPEENPQ KRSAAKASLQ KPVAKPNPNP SPAVVQNPNN SFEDMCFVEE KHQVNNNNNQ 240 FGLANSIDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSALINN NNNNPALFFE 300 EANPAKKLKS MDFETPCNNN IEWDASLDFL NEDAVATQDN GANP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 128 | 185 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-22 | 128 | 185 | 5 | 63 | ATERF1 |
3gcc_A | 4e-22 | 128 | 185 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa03g061220.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY088204 | 0.0 | AY088204.1 Arabidopsis thaliana clone 42960 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010502010.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12, partial | ||||
Swissprot | Q9SSA8 | 0.0 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A178WE84 | 1e-179 | A0A178WE84_ARATH; RAP2.12 | ||||
STRING | XP_010502010.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-153 | related to AP2 12 |