PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g060340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 22718.3 Da PI: 10.1504 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ ++r++lg+f+ta++Aa+a++ a+++++g Csa03g060340.1 40 RYRGVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTAQQAARAYDSAAREFRG 89 59*******.**********654...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-12 | 40 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 40 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-35 | 40 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-32 | 40 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.70E-30 | 40 | 97 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-22 | 40 | 98 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.3E-11 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MATNVGSKPD PVVVSPPPTN PTRESTGNNH NSNNAAKEIR YRGVRKRPWG RYAAEIRDPV 60 KKTRVWLGTF DTAQQAARAY DSAAREFRGS KAKTNFPTFL ELHGNAVGGG VGNNSPSCQS 120 SSVVSSSSSP KAARFVTPPP QLELSLGGGG GAYRRIPVTR PVYYFNMTTA FPKVTACGFQ 180 SESETSSVVD FEGGTGKISQ PLDLDLNLAP PAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-21 | 36 | 111 | 10 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g060340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB036884 | 3e-70 | AB036884.1 Arabidopsis thaliana AtERF8 mRNA for ERF transcription factor8, complete cds. | |||
GenBank | AC008007 | 3e-70 | AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence. | |||
GenBank | AC022520 | 3e-70 | AC022520.2 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete sequence. | |||
GenBank | AF499716 | 3e-70 | AF499716.1 Thellungiella halophila ethylene responsive element binding factor 4-like protein mRNA, complete cds. | |||
GenBank | AK117541 | 3e-70 | AK117541.1 Arabidopsis thaliana At1g53170 mRNA for putative ethylene responsive element binding factor 8 (ERF8), complete cds, clone: RAFL17-19-H19. | |||
GenBank | BT005401 | 3e-70 | BT005401.1 Arabidopsis thaliana clone U50346 putative ethylene responsive element binding factor 8 (At1g53170) mRNA, complete cds. | |||
GenBank | CP002684 | 3e-70 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500952.1 | 1e-156 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
Swissprot | Q9MAI5 | 2e-79 | ERF79_ARATH; Ethylene-responsive transcription factor 8 | ||||
TrEMBL | R0IN88 | 1e-100 | R0IN88_9BRAS; Uncharacterized protein | ||||
STRING | XP_010500952.1 | 1e-155 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 4e-61 | ethylene response factor 8 |
Publications ? help Back to Top | |||
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