PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g058360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 171aa MW: 19560.7 Da PI: 10.0157 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.2 | 2.2e-11 | 127 | 167 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq Csa03g058360.1 127 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 167 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.123 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-13 | 119 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-13 | 122 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-8 | 123 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-10 | 126 | 171 | No hit | No description |
Pfam | PF00010 | 9.0E-9 | 127 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MLSCFLIFSH LVQCLEEIFR PCLILRIKII ISKKRHLLRG NYLPWRICYL CKNNSDCGLT 60 RQEIPKSKKN QRVSSESNTV DESNTNCIDG QSLSNSSDDE KASVTSVKGK TRATKGTATD 120 PQSLYARKRR EKINERLKTL QNLVPNGTKV DISTMLEEAV HYVKFLQLQI K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 131 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g058360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493481 | 0.0 | AB493481.1 Arabidopsis thaliana At1g27740 mRNA for hypothetical protein, partial cds, clone: RAAt1g27740. | |||
GenBank | AY085436 | 0.0 | AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478126.1 | 6e-77 | PREDICTED: transcription factor bHLH54 | ||||
Swissprot | Q8LEG1 | 8e-75 | BH054_ARATH; Transcription factor bHLH54 | ||||
TrEMBL | R0GN15 | 2e-74 | R0GN15_9BRAS; Uncharacterized protein | ||||
STRING | XP_010478126.1 | 2e-76 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4132 | 22 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 3e-66 | root hair defective 6-like 4 |