PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa03g056670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 345aa MW: 39900.2 Da PI: 8.7295 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.1 | 1.6e-11 | 40 | 86 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +ykGV + + +g W A+I+ +kr++lg+f +a eAa a++ a kl+ Csa03g056670.1 40 KYKGVVQQP-NGNWGAQIYAD-----HKRIWLGTFKSAAEAATAYDSASIKLR 86 8********.8******9993.....4*********************99997 PP | |||||||
2 | B3 | 87.3 | 1.3e-27 | 171 | 274 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT.................---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+ltpsdv+k++rlv+pkk+a ++ g e+++l+++d++ r+W++k++y+k+s+++v+tkGW++Fvk+ +Lke Csa03g056670.1 171 FQKELTPSDVGKLNRLVIPKKHAVKYlpyinddpnekleegeiG---GavEDVELVFYDRTMRQWKFKYCYWKSSQSFVFTKGWNSFVKERKLKE 262 99****************************99888766666652...044999****************************************** PP T-EEEEEE-SSS CS B3 77 gDfvvFkldgrs 88 +D++ F+ + s Csa03g056670.1 263 KDVISFYICDVS 274 ******954434 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-17 | 40 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-17 | 40 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.16E-22 | 40 | 97 | No hit | No description |
PROSITE profile | PS51032 | 17.556 | 40 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-14 | 40 | 98 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.5E-5 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-5 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-30 | 166 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.02E-27 | 170 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.94E-24 | 171 | 269 | No hit | No description |
PROSITE profile | PS50863 | 11.448 | 171 | 286 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-24 | 171 | 275 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-19 | 171 | 283 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MTETETFLPP KKRMRLSDEP EKPLVVASAT KTVTVLGNVK YKGVVQQPNG NWGAQIYADH 60 KRIWLGTFKS AAEAATAYDS ASIKLRRFDA NSHRNFPRSD VTAYEQEFQD TYELEAVLNM 120 IKDGSYQNKF RDFLKLRSQM VERINDGGSK QVRGEADQES DKCFYRTQQQ FQKELTPSDV 180 GKLNRLVIPK KHAVKYLPYI NDDPNEKLEE GEIGGAVEDV ELVFYDRTMR QWKFKYCYWK 240 SSQSFVFTKG WNSFVKERKL KEKDVISFYI CDVSDNVKTL EGQSQDKNFR MIDVRYYSEN 300 GSVVPKEVNM KTENFVSSKL KDEETKTEEK KGSFMLFGVM IQCS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-25 | 168 | 271 | 5 | 96 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-25 | 168 | 271 | 5 | 96 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa03g056670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010501941.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C6P5 | 1e-178 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | R0GSI3 | 0.0 | R0GSI3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010501941.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50680.1 | 1e-163 | RAV family protein |