PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g056660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 334aa    MW: 38521.8 Da    PI: 9.7193
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g056660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.2e-094085253
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                    +ykGV +   +g W ++I+       +kr++lg+f +a eAa a++ a  kl
  Csa03g056660.1 40 KYKGVVQLQ-NGHWGVQIYTD-----HKRIWLGTFKSAVEAAMAYDSASIKL 85
                    8****9988.8******9883.....4*******************998776 PP
2B388.17.3e-28163258185
                     EEEE-..-HHHHTT-EE--HHH.HTT..........---......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkke....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                     f+k+ltpsdv+k++rlv+pk++a ++          +   e    e+++++++d++ r+W+++++y+k+s+++v+t+GWk+Fv++++Lke+D++ 
  Csa03g056660.1 163 FQKELTPSDVGKLNRLVIPKRHAVNYmpsisrpkekE---EveigEGVEIVVYDRELRQWKFRYCYWKSSQSFVITSGWKSFVREKKLKEKDVIS 254
                     99*********************999**998875441...2566699************************************************ PP

                     EEE- CS
              B3  82 Fkld 85 
                     F+  
  Csa03g056660.1 255 FYTC 258
                     *943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.4354097IPR001471AP2/ERF domain
SMARTSM003801.2E-1240103IPR001471AP2/ERF domain
PfamPF008475.0E-54085IPR001471AP2/ERF domain
CDDcd000183.92E-184097No hitNo description
Gene3DG3DSA:3.30.730.101.5E-134098IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-124097IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.102.4E-31156258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-26159262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-20162256No hitNo description
SMARTSM010191.4E-20163273IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956163279IPR003340B3 DNA binding domain
PfamPF023624.2E-25163259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTETETFLPP KKRMRLNYEP EKAQVVTSAT KKVAVRGNVK YKGVVQLQNG HWGVQIYTDH  60
KRIWLGTFKS AVEAAMAYDS ASIKLGRFDV NSYRNFPRSD VKKHEPEFQD RFTTESLLNI  120
IREGSYQQKF SDFLRSRSKI VAGINRGEAD QESNKGFSRT ELFQKELTPS DVGKLNRLVI  180
PKRHAVNYMP SISRPKEKEE VEIGEGVEIV VYDRELRQWK FRYCYWKSSQ SFVITSGWKS  240
FVREKKLKEK DVISFYTCDV KTLEGQIKNF FMIGVHYSSD NGSVVPEEAN MTVHDSSEEK  300
TEKFVSSKLK DEESKTEESK GSFMLFGVRI QCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-25159258496B3 domain-containing transcription factor NGA1
5os9_B6e-25159258496B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g056660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501940.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-161RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLR0GSI31e-170R0GSI3_9BRAS; Uncharacterized protein
STRINGXP_010501940.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-156RAV family protein