PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g056620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 253aa    MW: 27805.9 Da    PI: 8.9106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g056620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-204796255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr ++ +gr++AeIrd ++    + r++lg+f++aeeAa+a++ a+++l+g
  Csa03g056620.1 47 RFRGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDSAEEAARAYDSAARNLRG 96
                    69*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576116No hitNo description
CDDcd000181.68E-3046106No hitNo description
SMARTSM003806.1E-3747110IPR001471AP2/ERF domain
PROSITE profilePS5103223.34147104IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2247105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-3147104IPR001471AP2/ERF domain
PfamPF008474.3E-134796IPR001471AP2/ERF domain
PRINTSPR003672.4E-104859IPR001471AP2/ERF domain
PRINTSPR003672.4E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MIRKPSWSVL WGGCGCGCGR GRGSPAVAGP TAVSTVINGS VKETQQRFRG VRKRPWGRFA  60
AEIRDPWKKS RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDPSPP SPNLRFAAFP  120
TTVNQNQNQV DPFMDHRLYP GDNNNNNNNQ QFHPVVNRPT CSSMSSTVES FSGPRPTAAK  180
PVTTAAKRYP RTPPVVPEDC HSDCDSSSSV IDDDDIASSS RRRNPPFQFD LNFPPLDEFN  240
GSDDLHCTDL RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-20471111479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g056620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500641.11e-170PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803394e-90ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLD7KGQ91e-99D7KGQ9_ARALL; ATERF3/ERF3
TrEMBLV4KSQ74e-99V4KSQ7_EUTSA; Uncharacterized protein
STRINGXP_010500641.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-65ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]