PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g054970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 331aa    MW: 38448.8 Da    PI: 6.3309
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g054970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.2e-081153238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    ++r C+++ +k++ ++C +++ +lC+ C ++ H+       H+
  Csa03g054970.1 11 QPRPCDLCLNKHAVWYCASDDAFLCHVCDESVHSAnhvatkHE 53
                    7899*****************************6575556665 PP
2CCT67.15e-23282325144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++ RY++K+k+R+FeKkirYe+RK++A++RpR+KGrFv+++
  Csa03g054970.1 282 REARVWRYRDKKKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 325
                     9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-91057IPR000315B-box-type zinc finger
PROSITE profilePS501199.9541057IPR000315B-box-type zinc finger
PfamPF006431.3E-61154IPR000315B-box-type zinc finger
CDDcd000212.14E-101357No hitNo description
PfamPF062031.5E-17282324IPR010402CCT domain
PROSITE profilePS5101715.795282324IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MIPKCQEDVK QPRPCDLCLN KHAVWYCASD DAFLCHVCDE SVHSANHVAT KHERVCLRTN  60
EIPNNVLQGT TSHPVWHSGF RRKARTPRSR CEKKTQQKID DERRGEDPRV PEIGGEAMFF  120
IPEANDDEND TTSLVPEFEG FTVTEMGFFS SNHNGTQETT KQFNFEDEID AMEDLYYNEE  180
EKAAKTNGAE ARPGQSLMNC KNDYDNVIAI SAKREETEDY EDNARQGNML LRLNYENVIA  240
AWDKQESPRE AARNQTELFN TSNFQLVPLG IEEKRVTSRS EREARVWRYR DKKKNRLFEK  300
KIRYEVRKVN ADKRPRMKGR FVRRSLDPES *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g054970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500456.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 8-like isoform X2
SwissprotQ9M9B30.0COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLR0I7D90.0R0I7D9_9BRAS; Uncharacterized protein
STRINGXP_010500455.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.10.0B-box type zinc finger protein with CCT domain