PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g051550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 408aa    MW: 44799.9 Da    PI: 9.895
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g051550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05166188223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp Cg++F+  ++L+ H+ + H
  Csa03g051550.1 166 ACPQCGEVFPKLESLEIHQAVrH 188
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280165188IPR007087Zinc finger, C2H2
PROSITE profilePS501578.663165193IPR007087Zinc finger, C2H2
SuperFamilySSF563993.36E-21190403No hitNo description
Gene3DG3DSA:3.90.228.101.7E-11193404IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
RLSSDPKKKN KKKKTSQPPP QTQTQKLKQK TVPSTSSSSS SSWSQIKNLL SCKQIEGPRV  60
HEPSKITSSS CGSSLCKFSD VIYGNARVIH RSDHSPESSN LGQDARLLTR KPVNRESSSS  120
VRSNGCGAYS SYSTSKAMHF RKLSGCYECH MIVDPSRYPI APRICACPQC GEVFPKLESL  180
EIHQAVRHAV SELGPEDSGR NIVDIIFKSS WLRKDSPIYK IERILKVHNT QRTIQRFEDC  240
RDVVKSHAHA STRKEPRSAA DGNELLRFHC TTVSCSLGSR GSTSLCSAVP GCRVCTIIRH  300
GFHAKTVRLG NGEGKEEIKG VRTTASSGRA HDVLRCFDQR RAMLVCRVIA GRVRRVQSDV  360
LEDESGSGSY DSVAGPAGVY TSLDDLVVFN PKAILSCFVV IYKVSEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g051550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500301.10.0PREDICTED: uncharacterized protein LOC104777702
TrEMBLR0IT110.0R0IT11_9BRAS; Uncharacterized protein
STRINGXP_010500301.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-151C2H2-like zinc finger protein