PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g047080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20314.1 Da PI: 7.1462 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.1 | 3.1e-20 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ +qvtfskRr g++KKA+EL +LC+aev +++fs+ +k y++ Csa03g047080.1 11 VQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYTF 57 6788899***************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.76E-25 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.768 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGRSKIKMEQ VQDTNTKQVT FSKRRLGLFK KASELATLCN AEVGIVVFSP GNKPYTFGKP 60 NFDLIAERFK NEFEESDSFE TSGCSSRGSI ARQDKKICKR LDSINEEAEA EKKQGEDLHK 120 WLESAEEERF NKPIEEFTLE ELKEFEAKMK RLEGGIQINL NNMQASSSLL KISMQSCK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-15 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 9e-15 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 9e-15 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 9e-15 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6bz1_A | 9e-15 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6bz1_B | 9e-15 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6bz1_C | 9e-15 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
6bz1_D | 9e-15 | 1 | 78 | 1 | 78 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g047080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC036106 | 1e-139 | AC036106.6 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-139 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | DQ056634 | 1e-139 | DQ056634.1 Arabidopsis thaliana MADS-box family protein (At3g66656) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500154.1 | 1e-127 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 1e-61 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | R0HZP1 | 1e-102 | R0HZP1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010500154.1 | 1e-127 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G66656.1 | 1e-86 | AGAMOUS-like 91 |
Publications ? help Back to Top | |||
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