PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g039070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 171aa MW: 19153.4 Da PI: 8.8417 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 10 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T Ed+++v+++ ++G++ W++Ia +++ gRt++++k++w+++ Csa03g039070.1 10 RGNFTDSEDQIIVKLHSLFGNK-WSLIAGKLP-GRTDNEIKNYWNTH 54 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.8 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 10 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-15 | 10 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 11 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-12 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
PTLTLVSLXR GNFTDSEDQI IVKLHSLFGN KWSLIAGKLP GRTDNEIKNY WNTHIKRKLL 60 SRGIDPNTHN SIIQPKTAAF HSRNRDVKPT CHHVNAYVKL NCASASGTTS DEDLRLSVDR 120 DYRFDIVDSE LNLNLTLGSS PNRWAARDVC VCNLGSREPC MNCQTAKWVL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. {ECO:0000250|UniProtKB:Q38850}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g039070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF207991 | 3e-57 | AF207991.1 Arabidopsis thaliana putative transcription factor (MYB8) mRNA, complete cds. | |||
GenBank | AY519561 | 3e-57 | AY519561.1 Arabidopsis thaliana MYB transcription factor (At1g35515) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010501798.1 | 1e-124 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9SDS8 | 7e-68 | MYB8_ARATH; Transcription factor MYB8 | ||||
TrEMBL | R0GLS9 | 3e-60 | R0GLS9_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010501798.1 | 1e-123 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35515.1 | 3e-70 | high response to osmotic stress 10 |
Publications ? help Back to Top | |||
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