PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g038990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 106aa    MW: 12018.8 Da    PI: 8.1791
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g038990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.5e-13252151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien+  r vtf + ++ i  K +ELS LC+++v  +++s++g  y++ss
  Csa03g038990.1  2 KKIENYADRMVTFYRHKQKIYTKLNELSRLCGVDVGFLVYSNSGIAYTFSS 52
                    78***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.353154IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-5153IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-17176IPR002100Transcription factor, MADS-box
PfamPF003195.9E-15350IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MKKIENYADR MVTFYRHKQK IYTKLNELSR LCGVDVGFLV YSNSGIAYTF SSPSFEVVAN  60
RFLNEKMEEL CKVYNSISEK ADAEKQKGMA MAKAEAETLP VEKDT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g038990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095986.12e-65PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLD7LMQ23e-28D7LMQ2_ARALL; Uncharacterized protein
STRINGXP_010480901.11e-53(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.17e-27AGAMOUS-like 64