PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g038980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 265aa    MW: 28986.1 Da    PI: 4.8548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g038980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13198243655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Csa03g038980.1 198 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKTLQ 243
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.678192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16195253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-12196247No hitNo description
Gene3DG3DSA:4.10.280.107.1E-16197255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10198243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQSTNVGDGS GEDGGRGGGG GGEMSRSGLS RIRSAPATWI ETLLEEEEGD GLKPNLCLTE  60
LLTGNNNNNA GVITSRDSFE FPSSVEQGLY STTHQGGGFH RQNSSPADFL SGSCAGTDGF  120
FSNFGIPASY DYLSPNVDIS PTKRSRDMDE AHFSSQMKEE QMSGGISGMM DMNMDKLLED  180
SVPCRVRAKR GCATHPRSIA ERVRRTRISD RIRRLQELVP NMDKQTNTAD MLEEAVEYVK  240
TLQSQIQELT EQQKRCICKP KEEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11321GGRGGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g038980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117910.0AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAY0937940.0AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500031.10.0PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-147BH080_ARATH; Transcription factor bHLH80
TrEMBLR0IDA11e-151R0IDA1_9BRAS; Uncharacterized protein
STRINGXP_010500031.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-121bHLH family protein