PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g038530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 511aa MW: 56540.3 Da PI: 5.8085 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.5e-07 | 256 | 277 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Csa03g038530.1 256 FCTICGKGFKRDANLRMHMRGH 277 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.17E-5 | 253 | 281 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 255 | 282 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 255 | 277 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.8E-6 | 256 | 308 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 257 | 277 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 67 | 306 | 339 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 45 | 344 | 366 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
METEDDLCNQ TNWGSSSSKL REPCSSDQAF SGFTTQQKWE DASILDYEMG GVEPPSLQVF 60 DDMKASGQAN VDFLQGVRAQ AWDPRTMLSN LSFMEEKIHQ LQDLVHLIVG RGGGGQQLQQ 120 GRQDELAQQQ LITTDLTSII IQLISTAGSL LPSVKHNMST APGPYTGQPG SAMFPYAREA 180 NNVASQSLNN NNNNSGAQEF DLPKPVVLVD ERDSHVVEEH EMKDEDDAEE GENLPPGSYE 240 ILQLEKEEIL APHTHFCTIC GKGFKRDANL RMHMRGHGDE YKTAAALAKP NKESVPGSEP 300 MLIKRYSCPF LGCKRNKEHK KFQPLKTILC VKNHYKRTHC DKSFTCSRCH TKKFSVIADL 360 KTHEKHCGKN KWLCSCGTTF SRKDKLFGHI ALFQGHTPAI PLEETKPSAS TSAQRESSEF 420 GNNNQGMVGF NLGSAPNANQ ETAQPGMTDG KMSFEESFSP MNFDTCNFGG FHEFPRLMFD 480 DSESSFQMLI ANACGFSPRN VGESVLDTSL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g038530.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB300236 | 0.0 | AB300236.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Ler. | |||
GenBank | AB300238 | 0.0 | AB300238.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Kl-5. | |||
GenBank | AB300239 | 0.0 | AB300239.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Col-4. | |||
GenBank | AB300240 | 0.0 | AB300240.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Tu-0. | |||
GenBank | AB300241 | 0.0 | AB300241.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Lo-1. | |||
GenBank | AB300242 | 0.0 | AB300242.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Kb-0. | |||
GenBank | AB300243 | 0.0 | AB300243.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Pi-0. | |||
GenBank | AB300244 | 0.0 | AB300244.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Fr-3. | |||
GenBank | AB300245 | 0.0 | AB300245.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Go-0. | |||
GenBank | AB300246 | 0.0 | AB300246.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Van-3. | |||
GenBank | AB300247 | 0.0 | AB300247.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Li-1. | |||
GenBank | AC023913 | 0.0 | AC023913.7 Arabidopsis thaliana chromosome 1 BAC F7P12 genomic sequence, complete sequence. | |||
GenBank | AK227128 | 0.0 | AK227128.1 Arabidopsis thaliana mRNA for putative zinc finger protein, complete cds, clone: RAFL09-80-D13. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499986.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1 | ||||
Refseq | XP_010499987.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1 | ||||
Refseq | XP_010499988.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | D7KK61 | 0.0 | D7KK61_ARALL; Zinc finger family protein | ||||
STRING | XP_010499986.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6977 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |