PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g038360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 419aa    MW: 45645.3 Da    PI: 7.544
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g038360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF291.4e-0924522250
                    HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50
                    KKA ELSvLC+  v  i +++++ l+ ++
  Csa03g038360.1 24 KKATELSVLCGNSVGFICYGPENDLHVWP 52
                    89*************************98 PP
2SRF-TF29.11.2e-092652932250
                     HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  22 KKAeELSvLCdaevaviifsstgklyeys 50 
                     KKA ELSvLC+  v  i +++++ l+ y+
  Csa03g038360.1 265 KKATELSVLCGNSVGFICYGPDNDLHVYP 293
                     9*************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.58E-91682IPR002100Transcription factor, MADS-box
PfamPF003192.0E-62351IPR002100Transcription factor, MADS-box
PfamPF003192.0E-7250292IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-10252327IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.704265296IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAPCGKKPNK STNYFKQIFP AFKKKATELS VLCGNSVGFI CYGPENDLHV WPEPQDNPQA  60
LPEIVGKFNA LSDHMRTSHA SDLFDLPYLK GLSNEELLRH LAKLNSHSVE IKQKKMSILT  120
RKGISKKPND DHLRVSDNAA TIISNRKASD DRLGSGESGY VSRGFQETVS SLGSSAAASK  180
VFSVSDSSPL TLGLSCGDYF PATDISRVIP PDLQNQSELR SSSPTFKIAP RDDNPNKPGG  240
GGDDDDDLKR AKKNFFNNIF PTFKKKATEL SVLCGNSVGF ICYGPDNDLH VYPEPQDNPR  300
GIPEIVGKFN GLSDYKRKNH ASDLYDFPNL KGLSGDELRN HLINLESHLL GIKQKKLGVS  360
RKENSKPSGD IGVSALHPSG FACGDYLPVD PMEVCTNNEG AWDLGRIDFG FASSLLPS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g038360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083117.11e-177PREDICTED: uncharacterized protein LOC104700767 isoform X1
RefseqXP_019083118.11e-177PREDICTED: uncharacterized protein LOC104700767 isoform X1
SwissprotQ9ZUI94e-50AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLR0I9882e-71R0I988_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010424594.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.18e-50AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]