PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g038330.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 629aa MW: 70883.1 Da PI: 5.4372

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g038330.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.1	7.3e-49	13	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i vd+ykv+P++Lp +++k+++++w+fF+ r++ky++ r++r t +gyWkatgkd+ + Csa03g038330.1 13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPSELPglSMLKTGDRQWFFFTARNRKYPNAARSSRGTVTGYWKATGKDRVIEY 106 69*************************.89***********644888999*********************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktLvfy+grap+ge+tdWvmhey++ Csa03g038330.1 107 -NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139 .999**************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.689	12	162	IPR003441	NAC domain
SuperFamily	SSF101941	8.11E-55	13	162	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MADSCFKAGK FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPSELPGL 60 SMLKTGDRQW FFFTARNRKY PNAARSSRGT VTGYWKATGK DRVIEYNSRS VGLKKTLVFY 120 RGRAPNGERT DWVMHEYTMD EDELGRCKNA KEYYALYKLY KKSGAGPKNG EQYGAPFQEE 180 EWVGSDSEEG DNVAVPDDPA VVHYENCRRM DDPVVHYENC RRMDDPVVHY DNSRCMDDPV 240 VHYENCRRMD DPVVIYENSR RMDDTKFCNP VNVRLQDIEK LLNEIPDAPR VTTRHFNGFT 300 GVPQGNSAGE IQSTLLNSSS GEFVDPRKTG VFLPNSQPYN RQSSFQSGLK SENSFEATSG 360 MSPLLDFEKE DYIEMNDLLI PELGASSTEI STQFLNNGEV SDIGEFDQLF HDISMSLDAD 420 PVFQGTSTDM SSLSNFANNT SDQRQQFLYQ QLDQTLENQQ NNFMHPNNFM HPSTTLNQFT 480 DNMWFKDGQA VLFDQQPQSS SGVFTSHSTG VKPESMNPTV SVNAQNKEGQ NGGGTKSQFS 540 SALWELLESI PSTPASACEG PLNQTFVRMS SFSRIRFTGT SVTSRKVTVA KKRISNRGFL 600 LLSIMGALFA FFWVFIATVG VMERPCLS*

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MADSCFKAGK FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPSELPGL  60
SMLKTGDRQW FFFTARNRKY PNAARSSRGT VTGYWKATGK DRVIEYNSRS VGLKKTLVFY  120
RGRAPNGERT DWVMHEYTMD EDELGRCKNA KEYYALYKLY KKSGAGPKNG EQYGAPFQEE  180
EWVGSDSEEG DNVAVPDDPA VVHYENCRRM DDPVVHYENC RRMDDPVVHY DNSRCMDDPV  240
VHYENCRRMD DPVVIYENSR RMDDTKFCNP VNVRLQDIEK LLNEIPDAPR VTTRHFNGFT  300
GVPQGNSAGE IQSTLLNSSS GEFVDPRKTG VFLPNSQPYN RQSSFQSGLK SENSFEATSG  360
MSPLLDFEKE DYIEMNDLLI PELGASSTEI STQFLNNGEV SDIGEFDQLF HDISMSLDAD  420
PVFQGTSTDM SSLSNFANNT SDQRQQFLYQ QLDQTLENQQ NNFMHPNNFM HPSTTLNQFT  480
DNMWFKDGQA VLFDQQPQSS SGVFTSHSTG VKPESMNPTV SVNAQNKEGQ NGGGTKSQFS  540
SALWELLESI PSTPASACEG PLNQTFVRMS SFSRIRFTGT SVTSRKVTVA KKRISNRGFL  600
LLSIMGALFA FFWVFIATVG VMERPCLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-43	14	139	17	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250\|UniProtKB:Q949N0, ECO:0000269\|PubMed:23926065}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g038330.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084860	0.0	AY084860.1 Arabidopsis thaliana clone 11977 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499958.1	0.0	PREDICTED: NAC domain-containing protein 16-like
Swissprot	A4FVP6	0.0	NAC16_ARATH; NAC domain-containing protein 16
TrEMBL	R0IRU7	0.0	R0IRU7_9BRAS; Uncharacterized protein
STRING	XP_010499958.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2812	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34180.1	0.0	NAC domain containing protein 16

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053]