PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g037970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20799 Da PI: 4.6627 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.7e-20 | 20 | 69 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++k +g+Wv+eIr+p gk++r++lg++ tae+Aa+a++aa++ l+g+ Csa03g037970.1 20 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDAAALHLRGH 69 9****998.**********8...557**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-14 | 19 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.09 | 19 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-35 | 19 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 19 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-22 | 20 | 77 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.03E-18 | 20 | 78 | No hit | No description |
PRINTS | PR00367 | 2.7E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MENNYIGQRE HNFSVDQVSY RGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD 60 AAALHLRGHG TNLNFPELAN SFPQPESSSP EHVQAAAQEA ALMFKPGGST EPSLDSGQGI 120 SRVGLSPDQI QAINEFPLDS PRMGWMQDLE VTDYEELYGR FFGQYDRDEF FEMQQLQSIW 180 NSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-17 | 20 | 81 | 6 | 68 | ATERF1 |
3gcc_A | 5e-17 | 20 | 81 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g037970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC010164 | 1e-154 | AC010164.2 Arabidopsis thaliana chromosome I BAC F14M2 genomic sequence, complete sequence. | |||
GenBank | AY560838 | 1e-154 | AY560838.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g33760) mRNA, complete cds. | |||
GenBank | BT015928 | 1e-154 | BT015928.1 Arabidopsis thaliana At1g33760 mRNA, complete cds. | |||
GenBank | BT020566 | 1e-154 | BT020566.1 Arabidopsis thaliana At1g33760 gene, complete cds. | |||
GenBank | CP002684 | 1e-154 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010461198.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF022 | ||||
Refseq | XP_010478800.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF022 | ||||
Refseq | XP_010499915.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF022 | ||||
Refseq | XP_019098530.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF022 | ||||
Swissprot | Q9LQ28 | 1e-107 | ERF22_ARATH; Ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | R0IEL8 | 1e-113 | R0IEL8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010461198.1 | 1e-135 | (Camelina sativa) | ||||
STRING | XP_010478800.1 | 1e-135 | (Camelina sativa) | ||||
STRING | XP_010499915.1 | 1e-135 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 1e-107 | ERF family protein |