PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g037360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 699aa    MW: 79436.8 Da    PI: 7.4164
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g037360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.7e-53441711128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp  + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++
  Csa03g037360.1  44 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIK 137
                     699************************999.99***************6448899999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s k+  +g+kktLvfy+grap+ge+t+W+mheyr+
  Csa03g037360.1 138 S-KKVIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 171
                     *.9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-6335194IPR003441NAC domain
PROSITE profilePS5100558.4544194IPR003441NAC domain
PfamPF023652.2E-2745170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
LKLKLSSKSF LQVCFVNQRR PKKEKIKTLP EMTTEQALLS MEALPLGFRF RPTDEELINH  60
YLRLKINGRD SEVRVIPEID VCKWEPWDLP GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR  120
ATDIGYWKAT GKDRTIKSKK VIIGMKKTLV FYRGRAPRGE RTNWIMHEYR ATDKELDGTA  180
PGQNPYVLCR LFHKPSDSCD TANCDEIENV NTTPTTTRCS PDDTSSEMVQ ETAASRVHAL  240
NRSDDTARCL NDKSNDVKPD VSVINNASIN RPESSRAKDR VLGKTIVEET PLARDNSSHY  300
GPSFTQMNDR TYYPAQSSID FASSHMDSMY SSDFGNFDYG LHFQDGAAIQ DASLADVLDD  360
VFHNNNDSST ERKEFVLPNM MHWPGNTRLL STEYPFRKDA FAFLDGSAEV AGSQFVPENV  420
VPRWVNEGLV DSKEVVEIQS SSGSSRTLTP LHSNVLGQYA SASYASIDPF NYNVNHPEHS  480
SFEQSSFEQN SVDRKISASD ISGFKARSRE SQTNEEFVVE QGTAPRRIRL QIEQPLALVN  540
HKKERGADNY EEDEVQSAIS KVVEVNERCF LNRDKTRVRG PDDSLSESAE LRTQGTAQRR  600
IRLQTRLRKP PTTLNNTRRH SNRSEEEASH RKEKEDVSSS SSWQKQKKIM KKSLVQYSSM  660
VIIMAVIVVV LVGVWKESRD AQCSFLFHQL DSLKGMFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-463919812169NO APICAL MERISTEM PROTEIN
1ut4_B6e-463919812169NO APICAL MERISTEM PROTEIN
1ut7_A6e-463919812169NO APICAL MERISTEM PROTEIN
1ut7_B6e-463919812169NO APICAL MERISTEM PROTEIN
3swm_A6e-463919815172NAC domain-containing protein 19
3swm_B6e-463919815172NAC domain-containing protein 19
3swm_C6e-463919815172NAC domain-containing protein 19
3swm_D6e-463919815172NAC domain-containing protein 19
3swp_A6e-463919815172NAC domain-containing protein 19
3swp_B6e-463919815172NAC domain-containing protein 19
3swp_C6e-463919815172NAC domain-containing protein 19
3swp_D6e-463919815172NAC domain-containing protein 19
4dul_A6e-463919812169NAC domain-containing protein 19
4dul_B6e-463919812169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g037360.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499853.10.0PREDICTED: NAC domain-containing protein 14-like
SwissprotB5X5700.0NAC14_ARATH; NAC domain-containing protein 14
TrEMBLR0IMJ60.0R0IMJ6_9BRAS; Uncharacterized protein
STRINGXP_010499852.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.20.0NAC 014