PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g037070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 669aa    MW: 77256.1 Da    PI: 6.8807
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g037070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.7e-50161441128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk +
  Csa03g037070.1  16 VPPGFRFHPTEEELLHYYLRKKVNSQKIDL-DVIREVDLNKLEPWDIQEecRIGStPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKII 109
                     69****************************.9***************963433332456**********************************99 PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s   + +gl+ktLvfykgrap+g+k+dW+mheyrl
  Csa03g037070.1 110 CS-CVRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 144
                     99.9999***************************98 PP
2NAM162.41.7e-503224501128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk +
  Csa03g037070.1 322 VPPGFRFHPTEEELLHYYLRKKVNSQKIDL-DVIREVDLNKLEPWDIQEecRIGStPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKII 415
                     69****************************.9***************963433332456**********************************99 PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s   + +gl+ktLvfykgrap+g+k+dW+mheyrl
  Csa03g037070.1 416 CS-CVRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 450
                     99.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5512177IPR003441NAC domain
PROSITE profilePS5100555.0316177IPR003441NAC domain
PfamPF023652.1E-2617144IPR003441NAC domain
SuperFamilySSF1019412.88E-55318483IPR003441NAC domain
PROSITE profilePS5100555.03322483IPR003441NAC domain
PfamPF023652.1E-26323450IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MADTKVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVNS QKIDLDVIRE VDLNKLEPWD  60
IQEECRIGST PQNDWYFFSH KDKKYPTGTR TNRATVAGFW KATGRDKIIC SCVRRIGLRK  120
TLVFYKGRAP HGQKSDWIMH EYRLDDTPMT NGYSDVLTED PMSYNEEGWV VCRVFRKKNY  180
QKIDDCPKIT LSSSPDDTEE EKRPTFHNTQ NGNVLDHVLL CMNRTGSNIC MPESQTTTKT  240
QLQDDVLFMQ LPSLETPKSE SQVDQIFMTP NQLDPFNVKE KITGRPLLYS SRAKTKQNKK  300
ISPSSSMADT KVNLSINGQS KVPPGFRFHP TEEELLHYYL RKKVNSQKID LDVIREVDLN  360
KLEPWDIQEE CRIGSTPQND WYFFSHKDKK YPTGTRTNRA TVAGFWKATG RDKIICSCVR  420
RIGLRKTLVF YKGRAPHGQK SDWIMHEYRL DDTPMTNGYS DVLTEDPMSY NEEGWVVCRV  480
FRKKNYQKID DCPKITLSSS PDDTEEEMRP TFHNTQNGNV LDHVLLCMNR TGSNICMPES  540
QTTTKTQLQD DVLFMQLPSL ETPKSESQVD QIFMTPNQLD PFNVKEKITG RPVCSNWASL  600
DRLVAWQLNN GHHTCGRKSF DEEEEDGDTM MQRWDLHWNN ADNVDLWSSF TESSSSPSSL  660
DPLLHLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-451648515170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00016PBMTransfer from AT1G32770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g037070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1018920.0EF101892.1 Arabidopsis thaliana SND1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499821.10.0PREDICTED: NAC domain-containing protein 12-like
SwissprotQ9LPI70.0NAC12_ARATH; NAC domain-containing protein 12
TrEMBLR0IGT70.0R0IGT7_9BRAS; Uncharacterized protein
STRINGXP_010499821.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.10.0NAC domain containing protein 12
Publications ? help Back to Top
  1. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  2. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Huang J,Chen F,Wu S,Li J,Xu W
    Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis.
    Sci China Life Sci, 2016. 59(2): p. 194-205
    [PMID:26803299]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]