PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g036670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 495aa    MW: 55060 Da    PI: 4.486
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g036670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.56e-35491412103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ +++++sws+n+nsf+v+d+  fa+++Lpk Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  Csa03g036670.1  49 FLSKTYDMVDDPITDSIVSWSANNNSFIVWDPPLFARDLLPKNFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKT 134
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+ks+
  Csa03g036670.1 135 ITRRKSA 141
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3743133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-6245138IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3049138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-184972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-188799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDGGVSSKVS TSDGGGGGSV TTESMEIKPS PQPQPQPAAI LSSTAPPPFL SKTYDMVDDP  60
ITDSIVSWSA NNNSFIVWDP PLFARDLLPK NFKHSNFSSF VRQLNTYGFR KVDPDRWEFA  120
NEGFLRGQKH LLKTITRRKS AQGHGHQQSQ HSNGQNASVS ACVEVGKFGL EEEVERLKRD  180
KNVLMQELVR LRQQQQSTDN QLQTMVQRLQ GMENRQQQLM SFLAKAVQSP HFLSQFLQQQ  240
NQQNESSRRI SDTNKKRRFK RDGIVGNNDS ASPDGQIVKY QPPMHEQAKA MFKQLMKMEP  300
YKTGDDGFLL GNGTSTTEGT EMDTSSNHAS GITLQEMPTA SDIQSSSPIG TTPENVSAQP  360
EATENCIPSP DGLTLPEFSH MLPEINAEKP PEDFMEPNIG DSSPFLDPDL LIDDSLSFDI  420
DDFPMDPDIE PVDYSLLEDL LMSSTVSDNM DFTPVDNETE QKQNGWDKTQ HMDNLTQQMG  480
LLSPETIDPS RQNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-244714118123Heat shock factor protein 1
5d5u_B4e-244713827129Heat shock factor protein 1
5d5v_B4e-244713827129Heat shock factor protein 1
5d5v_D4e-244713827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253260NKKRRFKR
2254259KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g036670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841100.0AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D140.0AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499777.10.0PREDICTED: heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLR0GW980.0R0GW98_9BRAS; Uncharacterized protein
STRINGXP_010499777.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]