PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g036240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 26958.2 Da PI: 9.4899 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56 | 4.9e-18 | 9 | 56 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++ s++++ + R ++++KKA+ELS+LCd+ev+vi++ +g+l ++++ Csa03g036240.1 9 SSVSKKTTNLPMREHTMFKKASELSILCDVEVCVIYYNRDGELvRTWP 56 67788999999******************************9746887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-7 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.933 | 8 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.60E-19 | 12 | 83 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-14 | 13 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-12 | 14 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MFKKQPSLSS VSKKTTNLPM REHTMFKKAS ELSILCDVEV CVIYYNRDGE LVRTWPEDQS 60 KVRDMAERFS KLNDRERRKK STNLSLFLNK KTGLKDKKTS FDITDNRFSE KVLEMEASLE 120 SSLRVLQDKL LRLQNQAEPN QKNPVVSSGG FFTPDPSLMS GTEQDLSTPS LTQQHQSKFS 180 VFLYNHDNGS FCQLPDSSVS TFDPSTSSAS LGTTLXRNPI RRTLWCLPAA SSHQIHH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g036240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499740.1 | 1e-154 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9H9 | 1e-72 | AGL93_ARATH; Agamous-like MADS-box protein AGL93 | ||||
TrEMBL | R0H119 | 4e-93 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010499740.1 | 1e-154 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27580.1 | 1e-71 | AGAMOUS-like 89 |
Publications ? help Back to Top | |||
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