PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g035010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 449aa    MW: 50715.9 Da    PI: 5.8736
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g035010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.54.5e-101050343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r+  f +R++gi KK +E  +LC+++++ +i s+ 
  Csa03g035010.1 10 IANNYLRKQRFKRRKEGITKKLHEFTTLCGVKACAVICSPY 50
                    7899999999****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002664.85E-22181No hitNo description
PROSITE profilePS5006612.657148IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-6158IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-19292IPR002100Transcription factor, MADS-box
PfamPF003192.4E-101053IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MRSKLKLSLI ANNYLRKQRF KRRKEGITKK LHEFTTLCGV KACAVICSPY ENPVLWPSAE  60
GVQEVVSKVM ELPVEDQCKK MFNHESYLRR EITKAEKQVE KLRSDNRETQ LRQFMFDCLE  120
GKMNQHPYDA TDLQDLRSYI GSYIKKLDFR MKVLTEENGE SSSSTLLLPS SVAGADSPAV  180
EVTGHPGVAD ASMVTDFNGF DGYFPYDGMT MNPIPNQHES LVQHHVPVGS VQHHVPVGSV  240
QHHTPMNLDD QIQHGIYDMN LHQDMSLDPN QYPYPQGSFM NLLLGHPQEM GYDGEHAHIP  300
FVNDNYHQLP TIDLATTEQM GYDKEHESLV QHHVPVGSVQ HHVPVGSAEY HTPMNFDDQI  360
QHGIYDMNLH QDMSLDPVQP SYPQGSFMNL LMGHPQQMGY DEEHAHNPLM NGNYHQLPTM  420
DFASTGHMPS INTNTIAGVY APDDINGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11524RKQRFKRRKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g035010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501713.10.0PREDICTED: agamous-like MADS-box protein AGL86
SwissprotQ9C6V35e-91AGL86_ARATH; Agamous-like MADS-box protein AGL86
TrEMBLS6BCF01e-111S6BCF0_CRUWA; Agamous-like MADS-box protein AGL92 (Fragment)
STRINGXP_010501713.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.17e-90AGAMOUS-like 86
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]