PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g035010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 449aa MW: 50715.9 Da PI: 5.8736 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.5 | 4.5e-10 | 10 | 50 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r+ f +R++gi KK +E +LC+++++ +i s+ Csa03g035010.1 10 IANNYLRKQRFKRRKEGITKKLHEFTTLCGVKACAVICSPY 50 7899999999****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 4.85E-22 | 1 | 81 | No hit | No description |
PROSITE profile | PS50066 | 12.657 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-6 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-19 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-10 | 10 | 53 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MRSKLKLSLI ANNYLRKQRF KRRKEGITKK LHEFTTLCGV KACAVICSPY ENPVLWPSAE 60 GVQEVVSKVM ELPVEDQCKK MFNHESYLRR EITKAEKQVE KLRSDNRETQ LRQFMFDCLE 120 GKMNQHPYDA TDLQDLRSYI GSYIKKLDFR MKVLTEENGE SSSSTLLLPS SVAGADSPAV 180 EVTGHPGVAD ASMVTDFNGF DGYFPYDGMT MNPIPNQHES LVQHHVPVGS VQHHVPVGSV 240 QHHTPMNLDD QIQHGIYDMN LHQDMSLDPN QYPYPQGSFM NLLLGHPQEM GYDGEHAHIP 300 FVNDNYHQLP TIDLATTEQM GYDKEHESLV QHHVPVGSVQ HHVPVGSAEY HTPMNFDDQI 360 QHGIYDMNLH QDMSLDPVQP SYPQGSFMNL LMGHPQQMGY DEEHAHNPLM NGNYHQLPTM 420 DFASTGHMPS INTNTIAGVY APDDINGL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 24 | RKQRFKRRKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g035010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010501713.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL86 | ||||
Swissprot | Q9C6V3 | 5e-91 | AGL86_ARATH; Agamous-like MADS-box protein AGL86 | ||||
TrEMBL | S6BCF0 | 1e-111 | S6BCF0_CRUWA; Agamous-like MADS-box protein AGL92 (Fragment) | ||||
STRING | XP_010501713.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31630.1 | 7e-90 | AGAMOUS-like 86 |
Publications ? help Back to Top | |||
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