PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g034750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 440aa    MW: 47918.7 Da    PI: 9.1054
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g034750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.73.1e-1819107272
        trihelix   2 WtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e+++Liea++ ++er  r++                   ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r 
  Csa03g034750.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpppeqqqdsrsssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRV 107
                     **************55555444433444444444555554449999****************************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.761193IPR017877Myb-like domain
PfamPF138372.6E-1318108No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPPPEQ QQDSRSSSNK  60
PAELRWKWIE DYCWRKGCMR SQNQCNDKWD NLMRDYKKVR EYERRRVESS FAAGESSSSS  120
AAAAASAGDT ASYWKMEKSE RKERNLPSNM LPQTYQALFE VVENKTLSSS TAATAVAAAV  180
AAAAAAIESG NGSGGGQLQQ QGLGFVVPKV HQIIHQPPPL PPPPAVIVSL PPPPSQPPPP  240
LQPLPRPLLL PPPPPPSFHA QPILPTVAVT TTTTSATAST AFFSCSANTA HSRKTHIKDS  300
SSSDSDTSEY SDTSPAKRRR TMPTTTAGPS GGGVEVEEAR RSKRDEEETT VAAALSRSVT  360
VIANAIRESE ERQDRRHKEV MSVQERRLMI EESSVEMNRE GMNGLVEAIN KLASSIFALA  420
SSSSSSSARH NNQHQGGPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g034750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0076541e-162AC007654.2 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I, complete sequence.
GenBankAK2293841e-162AK229384.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-62-O19.
GenBankBT0205451e-162BT020545.1 Arabidopsis thaliana At1g31310 gene, complete cds.
GenBankCP0026841e-162CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499681.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLQ9SHF00.0Q9SHF0_ARATH; T19E23.10
STRINGXP_010499681.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-123Trihelix family protein