PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g034450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 442aa    MW: 49544.5 Da    PI: 6.9585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g034450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000143313641553
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
             HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                     ++++++ +L++++ +      +K + a++L++A+ YI+ 
  Csa03g034450.1 331 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 364
                     7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.994316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-4330370No hitNo description
SuperFamilySSF474593.93E-9330382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-7331373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLREECTPSS SWWEDVQHHH NDHANSITST SFYHKSSNNI SNTNVSCEED NLSISTVSAS  60
NRLDLTAESS NHHSLSAPAQ PPSSSDELLR DHVASSHNHL WSLAFLPGRS LGDQMMDHHH  120
HNHHLTSSRN SSTTSELQSF EPACDNGNGW IYDTNQVRYG QSSDQRLSKL TDLVGKHWSI  180
APPNNPDMNH NLHHHYDHDH HSQTNDDVSM YRQALEVKNE ETLCYNNGSS TGGGGSLFHD  240
PIESSRGFLD IRLSRPLTDI NPSFKPCFKA LNLSEFSKKE HQTASLETVR LGTTNAGKKK  300
RCEEISDEVS KKAKCGGGST LSPEKELPKA KLRDKITTLQ QIVSPFGKTD TASVLQEAIT  360
YINFYQEQVK LLSTPYMKNS AIKDPWGGWD REDHKKRGPK QHLDLRSRGL CLVPIACTPI  420
AYRDNSATDY WSPSYRGSLY R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g034450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934880.0AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499656.10.0PREDICTED: transcription factor bHLH111-like
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLR0GWX40.0R0GWX4_9BRAS; Uncharacterized protein
STRINGXP_010499656.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein