PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g033920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 29294.4 Da PI: 7.011 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.2 | 2.5e-07 | 135 | 179 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR+ri ++ +eL +l+P + +K + ae+ A +Y+k Lq Csa03g033920.1 135 SIAARKRRRRITEKTHELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 179 6788*******************98.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.392 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-10 | 130 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-10 | 132 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-8 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-5 | 135 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDTFFFQAQP QHQLHQPLHL EEALSPSLCE FSHFYEPFLP PQDIFLPSPK TEVFNESQDL 60 DAFFPTPKHQ KLINSSFHFN TNEPFFPSPN PNLLDSYVTE TSNFSEFLVP DFSPAFKVGW 120 SDKCDTKKPE LSAQSIAARK RRRRITEKTH ELGKLIPGSQ KHNTAEMFHA AAKYVKFLQA 180 QIEILRLKQT NMQSRESSKV GREMQFLLAS QEIQEKLSTE EVCVVPREMV QVLKAEECIL 240 RNPRISRDLN KLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 142 | RKRRR |
2 | 139 | 144 | KRRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g033920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488587 | 1e-180 | AF488587.1 Arabidopsis thaliana clone bHLH052 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478497.1 | 1e-170 | PREDICTED: transcription factor bHLH52-like | ||||
Swissprot | Q9SA82 | 1e-133 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | R0INR8 | 1e-158 | R0INR8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010501667.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 1e-125 | bHLH family protein |
Publications ? help Back to Top | |||
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