PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g033390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 305aa MW: 34021.1 Da PI: 9.0618 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.3 | 1.7e-35 | 19 | 135 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a +i +l+ +++ +++++ ++ + Csa03g033390.1 19 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPINTNFD--L-----ENQNQ--------TK--S 96 689************************************************************944444..2.....22222........22..3 PP TCP 97 skksqksaasalnlak.esrakarararertrekmrikn 134 +s +s++s l+l++ e r kar+rarert+++ ++ Csa03g033390.1 97 ACSSGTSESSLLSLSRtEIRGKARERARERTAKERDKDL 135 34455666667999999**************99987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-29 | 20 | 142 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.788 | 21 | 79 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.461 | 113 | 131 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MMKDWNNPSS RIIRVSRASG GKDRHSKVLT SKGLRDRRIR LSVATAIQFY DLQDRLGFDQ 60 PSKAVEWLIN AASDSITDLP PINTNFDLEN QNQTKSACSS GTSESSLLSL SRTEIRGKAR 120 ERARERTAKE RDKDLQNAHQ SSFTQLLTGG FDQQQQQQQP DNHRNWTGGS DCFNPVQFIP 180 NSSSTSHQEP TMNQNNHPFS FVPDQYNFGI SSSSALNGGY SSRGTLQSNS QSLFLNNNIT 240 QRASISSSSS SSSPMDSQSI SFFMATPPPL DHHSHQLPST FDGRLYLYYG EGNRNSDDKD 300 KDRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-21 | 26 | 80 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 8e-21 | 26 | 80 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g033390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC073506 | 1e-144 | AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence. | |||
GenBank | AY035008 | 1e-144 | AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds. | |||
GenBank | AY057672 | 1e-144 | AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds. | |||
GenBank | AY113898 | 1e-144 | AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-144 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460809.1 | 0.0 | PREDICTED: transcription factor TCP24 isoform X1 | ||||
Refseq | XP_010460810.1 | 0.0 | PREDICTED: transcription factor TCP24 isoform X1 | ||||
Refseq | XP_010460811.1 | 0.0 | PREDICTED: transcription factor TCP24 isoform X1 | ||||
Refseq | XP_019091815.1 | 0.0 | PREDICTED: transcription factor TCP24 isoform X1 | ||||
Refseq | XP_019091816.1 | 0.0 | PREDICTED: transcription factor TCP24 isoform X1 | ||||
Swissprot | Q9C758 | 1e-160 | TCP24_ARATH; Transcription factor TCP24 | ||||
TrEMBL | R0I1L0 | 1e-167 | R0I1L0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010460808.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13840 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-112 | TCP family protein |
Publications ? help Back to Top | |||
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