PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g033130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20518.1 Da    PI: 5.4521
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g033130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.52e-141564150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ie +  r vt+skRrngi  K +EL +LC+a+ a + +s +gk y++ 
  Csa03g033130.1 15 KKIEKDEDRLVTLSKRRNGIYTKLSELAILCGADFAFLGYSGSGKAYTFG 64
                    689*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-16766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.899767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-20777IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-13929IPR002100Transcription factor, MADS-box
PfamPF003191.8E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSKKTKGKQ RIYIKKIEKD EDRLVTLSKR RNGIYTKLSE LAILCGADFA FLGYSGSGKA  60
YTFGSPSFQA VVERFLNGEA SSSSSHLQRS VFDAHHKAKI QELCELYNSL VDKAREEEAE  120
EMKAAASVEP LPEDAWWKVD PMAVTDEEER KQLLEKFEGL YEKLCDEVDV RNQREDAAAK  180
N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g033130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499514.11e-132PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLR0IK325e-84R0IK32_9BRAS; Uncharacterized protein
STRINGXP_010499514.11e-131(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.17e-78AGAMOUS-like 64