PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g033110.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 354aa MW: 39226.9 Da PI: 4.9194

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g033110.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.6e-05	301	337	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a++L +Av+Y+ksL Csa03g033110.1 301 RRKMKKMMGVLRRIVPGG-----EQMNTASVLDEAVQYLKSL 337 899***********95.....68*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.033	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0055	295	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.09E-7	301	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.43E-6	301	342	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.2E-6	301	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MCIVVNKKGN RSLKEIGTFM MTTCFIANYQ SVQVCQAEYF RQLLKPVTVW FSEELSVGGA 60 SGLLGSKGTG GKFLEAYKGE SIPSRNFEAA CKFENNNQYP HFSDEVGDRN MHHNPYASGS 120 SFDALFPPCA KLPYHGVELQ PSEVCPKNFV IFDQTYDHSQ VMYHPELTHK LMNNPSLNAL 180 ASTFQNEYGA STYQNEYAGG SYYGNYDQEV SSSHQEDPNE IDALLSADED YEEDDNEGHE 240 EGDSEEVSTA RNSYRDYGNS SAESCCSSYG YNNNNNSNSN NNSRKQSLSG SASSNNDGKG 300 RRKMKKMMGV LRRIVPGGEQ MNTASVLDEA VQYLKSLKFE AQKLGVGHYS NQS*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MCIVVNKKGN RSLKEIGTFM MTTCFIANYQ SVQVCQAEYF RQLLKPVTVW FSEELSVGGA  60
SGLLGSKGTG GKFLEAYKGE SIPSRNFEAA CKFENNNQYP HFSDEVGDRN MHHNPYASGS  120
SFDALFPPCA KLPYHGVELQ PSEVCPKNFV IFDQTYDHSQ VMYHPELTHK LMNNPSLNAL  180
ASTFQNEYGA STYQNEYAGG SYYGNYDQEV SSSHQEDPNE IDALLSADED YEEDDNEGHE  240
EGDSEEVSTA RNSYRDYGNS SAESCCSSYG YNNNNNSNSN NNSRKQSLSG SASSNNDGKG  300
RRKMKKMMGV LRRIVPGGEQ MNTASVLDEA VQYLKSLKFE AQKLGVGHYS NQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	307	GRRKMKKMM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g033110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC008030	1e-131	AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence.
GenBank	AC022455	1e-131	AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBank	AF361607	1e-131	AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	AK230374	1e-131	AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05.
GenBank	AK318702	1e-131	AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13.
GenBank	AY074843	1e-131	AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	CP002684	1e-131	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499513.2	0.0	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	1e-121	BH144_ARATH; Transcription factor bHLH144
TrEMBL	R0GKS4	1e-133	R0GKS4_9BRAS; Uncharacterized protein
STRING	Bostr.15697s0289.1.p	1e-138	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	1e-116	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]