PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g031770.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 1777aa MW: 199725 Da PI: 4.9502

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g031770.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.8e-19	96	151	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++ +++yps+++r++L++kl+Lt+rq ++WF+ rR k+kk Csa03g031770.1 96 PKRQMKTPFQLETLEKVYSEEKYPSEATRADLSDKLNLTDRQLQMWFCHRRLKDKK 151 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-19	78	151	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.57E-16	87	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	92	152	IPR001356	Homeobox domain
SMART	SM00389	5.0E-18	94	156	IPR001356	Homeobox domain
Pfam	PF00046	7.6E-17	96	151	IPR001356	Homeobox domain
CDD	cd00086	1.51E-14	97	151	No hit	No description
PROSITE profile	PS50827	18.031	613	672	IPR018501	DDT domain
SMART	SM00571	4.6E-24	613	672	IPR018501	DDT domain
Pfam	PF02791	9.7E-18	614	669	IPR018501	DDT domain
Pfam	PF05066	9.4E-16	795	862	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	8.1E-7	995	1036	IPR028942	WHIM1 domain
Pfam	PF15613	4.7E-13	1170	1242	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1777 aa Download sequence Send to blast
MGRGAIKEEE SEGKRKTWRW PLATLVVVFL AVAVSSRTAS NVGFFFTDRN SCSCSLQMGS 60 DEEEDQIRSV ADVVAGSNNN KKKNKIDNSS SSSAKPKRQM KTPFQLETLE KVYSEEKYPS 120 EATRADLSDK LNLTDRQLQM WFCHRRLKDK KDDQSQSKTP VKPAVPAAVR PPPPAFASSV 180 NDLPPARSVP EQDSGSGSDS GSGCSPYSDS RRNFASGSSS SRAELDEYET MVKPSYEPRL 240 SAMVRRAIVC IEAQLGEPLR DDGPILGMEF DPLPPGAFGS PIAMQKHLLH PYESKMYEPH 300 DVRPRRSQAA ARSFHEQQSL DDPSSFTPEM YGRYSENHAH GMDYEIARPR SSSFMHENGS 360 LPRSYGTPGY VSRNCSTSQQ DMPSPIVASA HRGDRFLMEK DSSVLGTEDP YMLSDGVHKS 420 NDVHRKGKIH DVRLGRGSET RENRGPKDLE KLEIQKKKNE ERMRKEMERN ERERRKEEER 480 LMRERIKEEE RLQREQRREM ERREKFLQRE NERAEKKKQK EEIRREKDAI RRKIAIEKAT 540 ARRIAKESMD LIEDEQLELM ELAAISKGLP SVLQLDHDTL QNLELYRDSL STFPPKGLQL 600 KMPFAISPWK DSDESVGNLL MVWRFLTSFS DVLDLWPFTL DEFIQAFHDY DSRLLGEIHV 660 TLLRSIIRDI EDVARTPFSG IGNNQYTTAN PEGGHPQIVE GAYAWGFDIR SWKKNLNPLT 720 WPEILRQLAL STGLGPRLKK KSSRFTHTGD KDEAKGCEDI ISTIRSGSAA ESAFALMREK 780 GLLAPRKSRH RLTPGTVKFA AFHVLSLEGS KGLTVLELAD KIQKSGLRDL TTSKTPEASI 840 SVALTRDVKL FERIAPSTYC VRAPYVKDPA DGEAILADAR KKIRAFESGL TGPEDVNDLE 900 RDEDFEIDID EDPEVDDLAT LASASKSADL DEANVLSGKG GDTMFCDVKA GVKSEIEKEF 960 SSPPPSSIKS IAPQHNERLK DTAVGCVDAM VDESNEGQSW IQGLTEGDYC HLSVEERLNA 1020 LVALVGIANE GNSIRAGLED RMEAANSLKK QMWAEAQLDN SCMRDVLKLD FQNLASSKTE 1080 STMGLPIIQS SNRERDNFGG DPSELLDEKK PLEVVSNDLQ KSTAERGLIN QEAIISQENC 1140 SFQQGYVSKR SRSQLKSYIG HKAEEVYPYR SLPVGQDRRH NRYWLFAASA SKSDPSSGLL 1200 FVELHDGKWL LIDSEEAFDT LVASLDMRGI RESHLRIMLQ KIEGSFKENA RKNMKLARNP 1260 FLKEKSVMNH SPTDSVSPSS AVSGSNSDSM ETSNSIRVEL GRNDTEKKSL SKRFHDFQRW 1320 MWTETYSSLP SCAKKYGKKR SELLATCALC VASYLSEYTH CTSCHQRLDM VDDSEILDSG 1380 LTVSPLPFGV RLLKPLLVFL EASIPDEALE SFWTEDKRKI WGFRLNASSS PEEALQVLTT 1440 LETAIKKEYL SSNFMSAKEL LGVGDADADD PGSVDVLPWI PKTVSAVALR LSELDASIIY 1500 VKPEKPDLIP EDETEQISLF PGDSLFKGKG PREQEDQDEV VPNLGNRRSN KRARVSLGSG 1560 SNKKVKRKKA QGGPNRFVVS QRNVAVDNNL MSMELNHQIP GRGKRTVRKR PERINEENDH 1620 LVNRMADIVR PKTQEVEEDE EEEEQTFRDI DEDWAAGETP REMDEDWANE TPNRMTPMQV 1680 DDESDNSVGV ESEDDDVDGQ FVDYSQRNKW GLDWNSNANE AAMEDEEEEE VVGVERVEGE 1740 DDAEISESSE DDDDVPANNA ANNYDRESEG YSSSDS*

Sequence ? help Back to Top

Protein Sequence Length: 1777 aa Download sequence Send to blast

MGRGAIKEEE SEGKRKTWRW PLATLVVVFL AVAVSSRTAS NVGFFFTDRN SCSCSLQMGS  60
DEEEDQIRSV ADVVAGSNNN KKKNKIDNSS SSSAKPKRQM KTPFQLETLE KVYSEEKYPS  120
EATRADLSDK LNLTDRQLQM WFCHRRLKDK KDDQSQSKTP VKPAVPAAVR PPPPAFASSV  180
NDLPPARSVP EQDSGSGSDS GSGCSPYSDS RRNFASGSSS SRAELDEYET MVKPSYEPRL  240
SAMVRRAIVC IEAQLGEPLR DDGPILGMEF DPLPPGAFGS PIAMQKHLLH PYESKMYEPH  300
DVRPRRSQAA ARSFHEQQSL DDPSSFTPEM YGRYSENHAH GMDYEIARPR SSSFMHENGS  360
LPRSYGTPGY VSRNCSTSQQ DMPSPIVASA HRGDRFLMEK DSSVLGTEDP YMLSDGVHKS  420
NDVHRKGKIH DVRLGRGSET RENRGPKDLE KLEIQKKKNE ERMRKEMERN ERERRKEEER  480
LMRERIKEEE RLQREQRREM ERREKFLQRE NERAEKKKQK EEIRREKDAI RRKIAIEKAT  540
ARRIAKESMD LIEDEQLELM ELAAISKGLP SVLQLDHDTL QNLELYRDSL STFPPKGLQL  600
KMPFAISPWK DSDESVGNLL MVWRFLTSFS DVLDLWPFTL DEFIQAFHDY DSRLLGEIHV  660
TLLRSIIRDI EDVARTPFSG IGNNQYTTAN PEGGHPQIVE GAYAWGFDIR SWKKNLNPLT  720
WPEILRQLAL STGLGPRLKK KSSRFTHTGD KDEAKGCEDI ISTIRSGSAA ESAFALMREK  780
GLLAPRKSRH RLTPGTVKFA AFHVLSLEGS KGLTVLELAD KIQKSGLRDL TTSKTPEASI  840
SVALTRDVKL FERIAPSTYC VRAPYVKDPA DGEAILADAR KKIRAFESGL TGPEDVNDLE  900
RDEDFEIDID EDPEVDDLAT LASASKSADL DEANVLSGKG GDTMFCDVKA GVKSEIEKEF  960
SSPPPSSIKS IAPQHNERLK DTAVGCVDAM VDESNEGQSW IQGLTEGDYC HLSVEERLNA  1020
LVALVGIANE GNSIRAGLED RMEAANSLKK QMWAEAQLDN SCMRDVLKLD FQNLASSKTE  1080
STMGLPIIQS SNRERDNFGG DPSELLDEKK PLEVVSNDLQ KSTAERGLIN QEAIISQENC  1140
SFQQGYVSKR SRSQLKSYIG HKAEEVYPYR SLPVGQDRRH NRYWLFAASA SKSDPSSGLL  1200
FVELHDGKWL LIDSEEAFDT LVASLDMRGI RESHLRIMLQ KIEGSFKENA RKNMKLARNP  1260
FLKEKSVMNH SPTDSVSPSS AVSGSNSDSM ETSNSIRVEL GRNDTEKKSL SKRFHDFQRW  1320
MWTETYSSLP SCAKKYGKKR SELLATCALC VASYLSEYTH CTSCHQRLDM VDDSEILDSG  1380
LTVSPLPFGV RLLKPLLVFL EASIPDEALE SFWTEDKRKI WGFRLNASSS PEEALQVLTT  1440
LETAIKKEYL SSNFMSAKEL LGVGDADADD PGSVDVLPWI PKTVSAVALR LSELDASIIY  1500
VKPEKPDLIP EDETEQISLF PGDSLFKGKG PREQEDQDEV VPNLGNRRSN KRARVSLGSG  1560
SNKKVKRKKA QGGPNRFVVS QRNVAVDNNL MSMELNHQIP GRGKRTVRKR PERINEENDH  1620
LVNRMADIVR PKTQEVEEDE EEEEQTFRDI DEDWAAGETP REMDEDWANE TPNRMTPMQV  1680
DDESDNSVGV ESEDDDVDGQ FVDYSQRNKW GLDWNSNANE AAMEDEEEEE VVGVERVEGE  1740
DDAEISESSE DDDDVPANNA ANNYDRESEG YSSSDS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	151	RRLKDKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g031770.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC010155	0.0	AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499372.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	D7KCW8	0.0	D7KCW8_ARALL; HB-1
STRING	XP_010499372.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1