PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g029790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 279aa    MW: 32090.9 Da    PI: 5.2062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g029790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.8e-121860148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll +++   G g+W++ a+  g     k+c++rw++yl
   Csa03g029790.1 18 KGPWTLEEDTLLTNYISHNGEGRWNLLAKSSG-----KSCRLRWLNYL 60
                     79******************************.....*********97 PP
2Myb_DNA-binding50.93.5e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   Csa03g029790.1  66 RGNLTPKEQLLILELHSKWGNR-WSKIAKYLP-GRTDNDIKNYWRT 109
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.5971360IPR017930Myb domain
SuperFamilySSF466895.24E-2716107IPR009057Homeodomain-like
SMARTSM007177.7E-101762IPR001005SANT/Myb domain
PfamPF002496.0E-101860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-181967IPR009057Homeodomain-like
CDDcd001675.28E-82060No hitNo description
PROSITE profilePS5129425.78461115IPR017930Myb domain
SMARTSM007178.7E-1565113IPR001005SANT/Myb domain
PfamPF002492.8E-1566109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2368114IPR009057Homeodomain-like
CDDcd001672.09E-1170109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSNIMRCSGN EEGAEQRKGP WTLEEDTLLT NYISHNGEGR WNLLAKSSGK SCRLRWLNYL  60
KPDIKRGNLT PKEQLLILEL HSKWGNRWSK IAKYLPGRTD NDIKNYWRTR VQKQARQLNI  120
DSNSHKFLEV VRSFWVPRLI HKMNDNSNTN TKATPPDLLG PVLQDNNFSP DYSNMDFSTS  180
MSVDLKKISQ VMESSDIETT CSLYLDGSRG SSSQCVSEDY SSFPCLEEEY MVATMGNSDI  240
LALQDCHVAD STYEDDVTQD PMWNMDDIWQ FKEYAHFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24181157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g029790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348150.0AF334815.2 Arabidopsis thaliana putative transcription factor (MYB116) mRNA, complete cds.
GenBankAY5195580.0AY519558.1 Arabidopsis thaliana MYB transcription factor (At1g25340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499121.10.0PREDICTED: myb-related protein 305-like
SwissprotQ9C9G76e-99MYB62_ARATH; Transcription factor MYB62
TrEMBLR0GKF70.0R0GKF7_9BRAS; Uncharacterized protein
STRINGXP_010499121.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.21e-170myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]