PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g029520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 358aa MW: 40135.7 Da PI: 9.0536

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g029520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.7	2.3e-32	220	275	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ Csa03g029520.1 220 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 275 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-29	217	278	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.163	217	277	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-18	218	278	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-27	220	275	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-7	222	273	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDVYAHKMKR CHEYVEALEE EHKKILVFQR ELPLCLELVT QAIESCRKEL SGSSSMSEHV 60 RSQSECSERT TSECGGGGAA VFEEFIPIKW SSPSSSDHEN DRDGADEKKI KMNNENNGDK 120 KKSDWLRSVQ LWNQSPDPQP KEDDHQVINK QKAAAVIEVK RNNAGAFQPF QKDKPKANER 180 SPQPLKTITP TPTTTSSSTA ETVGGKSEFE QLKQSQSSRK QRRCWSPELH RRFLHALQQL 240 GGSHVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRLHTRRPA TPSSTNGGEN QQQRQFMVVE 300 GIWVPSSHDR ATNTRVYAPI ATQPPPQSSP SGERSSHRCK SPATSSSTHT QHLLPLS*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDVYAHKMKR CHEYVEALEE EHKKILVFQR ELPLCLELVT QAIESCRKEL SGSSSMSEHV  60
RSQSECSERT TSECGGGGAA VFEEFIPIKW SSPSSSDHEN DRDGADEKKI KMNNENNGDK  120
KKSDWLRSVQ LWNQSPDPQP KEDDHQVINK QKAAAVIEVK RNNAGAFQPF QKDKPKANER  180
SPQPLKTITP TPTTTSSSTA ETVGGKSEFE QLKQSQSSRK QRRCWSPELH RRFLHALQQL  240
GGSHVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRLHTRRPA TPSSTNGGEN QQQRQFMVVE  300
GIWVPSSHDR ATNTRVYAPI ATQPPPQSSP SGERSSHRCK SPATSSSTHT QHLLPLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g029520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499096.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FPE8	1e-166	HHO3_ARATH; Transcription factor HHO3
TrEMBL	R0GQJ3	1e-176	R0GQJ3_9BRAS; Uncharacterized protein
STRING	XP_010499096.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-158	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]