PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g029270.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 405aa MW: 44707.4 Da PI: 5.453

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g029270.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.1e-09	245	293	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa03g029270.1 245 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 293 58***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.14E-11	240	297	No hit	No description
SuperFamily	SSF47459	1.83E-16	240	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.497	242	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	243	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-6	245	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-9	248	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0009911	Biological Process	positive regulation of flower development
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDMSDKDEFG AKKRDLDWRI SDSNNPIVSY PPENPMSAPS QMMDESFRQN LSHDGGFNVH 60 TDAGTSFRGN VDRPLEMGGW NMAQFSADSG FIERAAKFSF FGCGSFGEMV MNNQSNGLFV 120 QETQKNQIGV ATGSKQVDGP VTVVKENGSS NVSEDSQSSG GNNGHDDAKC MEISSKVFNA 180 KKRKRTRKDS EHGSQQSGEE QEDKKEKDEQ SPNSNANKTN SGKQASDPLK DGYIHMRARR 240 GQATNSHSLA ERVRREKISE RMKFLQDLVP GCDKVTGKAV MLDEIINYVQ SLQCQIEFLS 300 MKLSAVNPVL DFNLESLLAK DALQVPAPTF PQDMSMLYPP LSYLSQKGFM QPNLSSMSTL 360 NGGLKQQETH GYESDQHTAV HMNHETGTAH DHEKDTTANT EVEP*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDMSDKDEFG AKKRDLDWRI SDSNNPIVSY PPENPMSAPS QMMDESFRQN LSHDGGFNVH  60
TDAGTSFRGN VDRPLEMGGW NMAQFSADSG FIERAAKFSF FGCGSFGEMV MNNQSNGLFV  120
QETQKNQIGV ATGSKQVDGP VTVVKENGSS NVSEDSQSSG GNNGHDDAKC MEISSKVFNA  180
KKRKRTRKDS EHGSQQSGEE QEDKKEKDEQ SPNSNANKTN SGKQASDPLK DGYIHMRARR  240
GQATNSHSLA ERVRREKISE RMKFLQDLVP GCDKVTGKAV MLDEIINYVQ SLQCQIEFLS  300
MKLSAVNPVL DFNLESLLAK DALQVPAPTF PQDMSMLYPP LSYLSQKGFM QPNLSSMSTL  360
NGGLKQQETH GYESDQHTAV HMNHETGTAH DHEKDTTANT EVEP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	185	KKRKRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g029270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630483	0.0	AJ630483.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g26260.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499063.1	0.0	PREDICTED: transcription factor bHLH76-like
Swissprot	Q9C670	0.0	BH076_ARATH; Transcription factor bHLH76
TrEMBL	R0IDB9	0.0	R0IDB9_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010499063.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16689	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.2	0.0	cryptochrome-interacting basic-helix-loop-helix 5

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]