PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g028620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 423aa    MW: 48197.8 Da    PI: 6.5554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g028620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.8e-53161431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+
  Csa03g028620.1  16 LLPGFRFHPTDEELVSFYLKRKVQHNPLSI-ELIRQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSS 109
                     579***************************.89***************7777889***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Csa03g028620.1 110 eGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143
                     56667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5912175IPR003441NAC domain
PROSITE profilePS5100557.53216175IPR003441NAC domain
PfamPF023651.2E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGERNDDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH NPLSIELIRQ LDIYKYDPWD  60
LPKFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT GTDRPIYSSE GNKCIGLKKS  120
LVFYKGRAAK GVKTDWMMHE FRLPSLSEPS PPSKRFFDSP VSPNDSWAIC RIFKKTNTTT  180
LRALSHSFVS SLPPETSTDT MSDQKPSGPS NTYHFSSDKT LKTSPHFQFH HENMNTPKTS  240
NSTTPSVATI SPFSYLDCTS YDKPTNVFTP VSCLEQQYLT NLFLSTQETQ PQFPRPTLSN  300
EIPSFLLNTS SDSTYLGMGE YTNHIDLSAV LAQEECPALV SLPQEYQEKG FEGNVVMKNM  360
RGSSEDHHGH CDTLRYEDFA STIDENHHHH HQDLKQNMTL LESYYSSLSS INGDLPVCFS  420
TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-561617917169NO APICAL MERISTEM PROTEIN
1ut4_B8e-561617917169NO APICAL MERISTEM PROTEIN
1ut7_A8e-561617917169NO APICAL MERISTEM PROTEIN
1ut7_B8e-561617917169NO APICAL MERISTEM PROTEIN
3swm_A1e-551617920172NAC domain-containing protein 19
3swm_B1e-551617920172NAC domain-containing protein 19
3swm_C1e-551617920172NAC domain-containing protein 19
3swm_D1e-551617920172NAC domain-containing protein 19
3swp_A1e-551617920172NAC domain-containing protein 19
3swp_B1e-551617920172NAC domain-containing protein 19
3swp_C1e-551617920172NAC domain-containing protein 19
3swp_D1e-551617920172NAC domain-containing protein 19
4dul_A8e-561617917169NAC domain-containing protein 19
4dul_B8e-561617917169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g028620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0055080.0AC005508.1 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498990.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH00.0FEZ_ARATH; Protein FEZ
TrEMBLR0GL880.0R0GL88_9BRAS; Uncharacterized protein
STRINGXP_010498990.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.10.0NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]