PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g028490.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 29457.7 Da PI: 4.8737

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g028490.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.5	9.4e-18	70	123	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eql++Le+ Fe +++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k Csa03g028490.1 70 KKRRLNMEQLKTLEKNFEIGNKLESDRKIELARALGLQPRQIAIWFQNRRARSK 123 456899**********************************************99 PP
2	HD-ZIP_I/II	122.4	2.3e-39	69	161	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eq+k+LE++Fe +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlEkdy+ Lkr++++l++ene L++++++L++++++ Csa03g028490.1 69 EKKRRLNMEQLKTLEKNFEIGNKLESDRKIELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDILKRQFESLRDENEVLQTQNQKLQAQVMA 161 69**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.19E-19	53	127	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-18	57	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	65	125	IPR001356	Homeobox domain
SMART	SM00389	3.9E-18	68	129	IPR001356	Homeobox domain
CDD	cd00086	6.13E-15	70	126	No hit	No description
Pfam	PF00046	4.9E-15	70	123	IPR001356	Homeobox domain
PRINTS	PR00031	4.8E-6	96	105	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.8E-6	105	121	IPR000047	Helix-turn-helix motif
SMART	SM00340	0.0054	125	168	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.0E-14	125	165	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009739	Biological Process	response to gibberellin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSCNNGLAFF PENFSLQNHQ QQEEDHPQLL QDFNGFLGKR SPINNVQGFC NLDMNGEEEY 60 SDDGSKMGEK KRRLNMEQLK TLEKNFEIGN KLESDRKIEL ARALGLQPRQ IAIWFQNRRA 120 RSKTKQLEKD YDILKRQFES LRDENEVLQT QNQKLQAQVM ALKSREPIES INLNKETEGS 180 CSDRSENISG DIRPPEIDSQ CALGHPPTAT TMQFFQNSSS EQRMVKEENS ISNMFCGIDD 240 QSGFWPWLDQ QHYN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	125	RRARSKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g028490.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellic acid (GA3). {ECO:0000269\|PubMed:17387478}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228056	0.0	AK228056.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-55-J15.
GenBank	AY084913	0.0	AY084913.1 Arabidopsis thaliana clone 121220 mRNA, complete sequence.
GenBank	BT009727	0.0	BT009727.1 Arabidopsis thaliana At1g26960 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010498978.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-23
Swissprot	Q8LFD3	1e-180	ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBL	R0I458	1e-180	R0I458_9BRAS; Uncharacterized protein
STRING	XP_010498978.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2633	27	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26960.1	0.0	homeobox protein 23

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]