PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g028420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 227aa MW: 26446.7 Da PI: 6.9516 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.1 | 1.3e-17 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+ ql+ Lee F++++ + +++ LA+klgL+ +qV vWFqNrRa++k Csa03g028420.1 66 KKRKLTPIQLRLLEESFKEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYK 119 56699************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114.2 | 7.8e-37 | 66 | 156 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l+ q++lLEesF+ee++Lep+rK la++Lglqp qvavWFqnrRAR+ktkqlE+dy++Lk++y +lk+e + + ++++L+++++ Csa03g028420.1 66 KKRKLTPIQLRLLEESFKEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDYDSLKASYAKLKTEWDVIYLQNQNLKNKVA 156 9**************************************************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-18 | 48 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.568 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.0E-17 | 64 | 125 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.9E-15 | 66 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.34E-15 | 66 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 68 | 129 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.1E-5 | 92 | 101 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.1E-5 | 101 | 117 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-12 | 121 | 162 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MENSDTDSEV FFWFQNQSHG HKFPPSCFPS SAHSAYYGSS SMSNTQTNTV DEEDVCESNM 60 KREITKKRKL TPIQLRLLEE SFKEEKRLEP DRKLWLAEKL GLQPSQVAVW FQNRRARYKT 120 KQLEHDYDSL KASYAKLKTE WDVIYLQNQN LKNKVALLKE KLRMQENLEP QAMETKKLEK 180 EGSSVKSYNT KYSEEEEGLG NQYSFPELAV LGLYYDSTLT TSNLRL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 121 | RRARYKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g028420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC000348 | 1e-118 | AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 1e-118 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498975.1 | 1e-168 | PREDICTED: homeobox-leucine zipper protein ATHB-54-like | ||||
Swissprot | P0CJ65 | 1e-136 | ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54 | ||||
TrEMBL | A0A178WF45 | 1e-133 | A0A178WF45_ARATH; HB54 | ||||
STRING | XP_010498975.1 | 1e-167 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15908 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27045.1 | 1e-127 | HD-ZIP family protein |