PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g027340.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

YABBY

Protein Properties

Length: 233aa MW: 25815.2 Da PI: 6.412

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g027340.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	253.4	3.7e-78	13	183	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++f+ ++q+C+vqC+fC+til+vsvP+tsl++vvtvrCGhCtsllsvnl+kas +lla+ s+lde++kee++++++veee+lk+n ++e++ Csa03g027340.1 13 NLFDLPGQICHVQCGFCTTILLVSVPYTSLSMVVTVRCGHCTSLLSVNLMKASfiplHLLASLSNLDEAGKEEVAATDGVEEEALKVNSLEKENS 107 67999********************************************9999999*************************99877665 PP YABBY 93 .stsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +t vss s+nede+v+rv++ v++PPekrqr+Psayn+fikeei+r+ka+nP+++h+eafs+aaknWahfP++h++ Csa03g027340.1 108 pTTLVSS---SDNEDEDVSRVYQvVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPVHNK 183 0555555...89*******899*************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.0E-61	18	182	IPR006780	YABBY protein
SuperFamily	SSF47095	6.55E-9	124	179	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-5	130	179	IPR009071	High mobility group box domain
CDD	cd00084	0.00185	138	174	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MTKIPNMTTT LNNLFDLPGQ ICHVQCGFCT TILLVSVPYT SLSMVVTVRC GHCTSLLSVN 60 LMKASFIPLH LLASLSNLDE AGKEEVAATD GVEEEALKVN SLEKENSPTT LVSSSDNEDE 120 DVSRVYQVVN KPPEKRQRAP SAYNCFIKEE IRRLKAQNPS MAHKEAFSLA AKNWAHFPPV 180 HNKRAASDHC FCVEDNNAIP SCNALEDHEE SNNGFRERKA QRHSIWGKSP FE*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g027340.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF195047	0.0	AF195047.1 Arabidopsis thaliana INNER NO OUTER (INO) mRNA, complete cds.
GenBank	BT026410	0.0	BT026410.1 Arabidopsis thaliana At1g23420 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010498851.1	1e-174	PREDICTED: axial regulator YABBY 4-like isoform X2
Swissprot	Q9LDT3	1e-153	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1P8APE2	1e-151	A0A1P8APE2_ARATH; Plant-specific transcription factor YABBY family protein
TrEMBL	Q1PFT2	1e-151	Q1PFT2_ARATH; At1g23420
STRING	XP_010498850.1	1e-172	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8044	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-145	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]