PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g027300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 159aa    MW: 18082.2 Da    PI: 6.9628
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g027300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-091011352155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  Csa03g027300.1 101 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 135
                     679*****************************985 PP

2ELK31.44.1e-115576122
             ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                    +LK++LlrK++++++sLk EFs
  Csa03g027300.1 55 DLKDRLLRKFGSRISSLKLEFS 76
                    69*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011886.3E-55576IPR005539ELK domain
PROSITE profilePS512139.835575IPR005539ELK domain
PfamPF037899.8E-85576IPR005539ELK domain
PROSITE profilePS5007112.34175138IPR001356Homeobox domain
SuperFamilySSF466895.13E-2076152IPR009057Homeodomain-like
SMARTSM003891.9E-1277142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-2880139IPR009057Homeodomain-like
CDDcd000861.14E-1184139No hitNo description
PfamPF059201.5E-1795134IPR008422Homeobox KN domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MLGQGRGMSP HGDKTISPLL TNDNGEDGAI SSDEELSGGD HEVAEDGKQR CEDRDLKDRL  60
LRKFGSRISS LKLEFSKKKK KGKLPREARQ ALLDWWNLHY KWPYPTEGDK IALADATGLD  120
QKQINNWFIN QRKRHWKPSE NMPFAMMDDS SGSFFTEE*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g027300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723611e-166AB072361.1 Arabidopsis thaliana KNAT6S mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBankAB0723621e-166AB072362.1 Arabidopsis thaliana KNAT6L mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBankBT0029301e-166BT002930.1 Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
GenBankBT0043701e-166BT004370.1 Arabidopsis thaliana clone U20256 putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477633.14e-95PREDICTED: homeobox protein knotted-1-like 6
RefseqXP_023645734.11e-93homeobox protein knotted-1-like 6
SwissprotQ84JS62e-88KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLR0GS911e-107R0GS91_9BRAS; Uncharacterized protein
STRINGXP_006305909.11e-108(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.27e-83KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]