PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g026820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 181aa    MW: 19354.9 Da    PI: 10.8951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g026820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1778145155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng..........kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+W+AeIr+  +   +g           r +r++lg+f taeeAa a+++a+ +l g
  Csa03g026820.1  78 KKYRGVRQRP-WGKWAAEIRCaSRRahGGgggggkggggGRpQRIWLGTFETAEEAALAYDNAAIQLLG 145
                     59********.**********777797225688877664449**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.74679153IPR001471AP2/ERF domain
SMARTSM003809.2E-2979159IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1779153IPR016177DNA-binding domain
PfamPF008471.7E-1279145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2779153IPR001471AP2/ERF domain
PRINTSPR003674.7E-128091IPR001471AP2/ERF domain
CDDcd000182.72E-2280152No hitNo description
PRINTSPR003674.7E-12119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKKIVRISFT DMEATDSSSS EDESSSSPPS SRRRGKKLVK EIVLDSSDPQ AEVRKTRFKI  60
RIPSRFLAAT KTTETKKKKY RGVRQRPWGK WAAEIRCASR RAHGGGGGGG KGGGGGRPQR  120
IWLGTFETAE EAALAYDNAA IQLLGPDAPT NFGRPDAAAP AVMKLQDSDA PSSAKTPPVV  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1676152262ATERF1
3gcc_A1e-1676152262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108115GGKGGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g026820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0870649e-39AY087064.1 Arabidopsis thaliana clone 31252 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498790.11e-128PREDICTED: ethylene-responsive transcription factor ERF069-like
SwissprotQ8W4I51e-66ERF69_ARATH; Ethylene-responsive transcription factor ERF069
TrEMBLV4KWU52e-69V4KWU5_EUTSA; Uncharacterized protein
STRINGXP_010498790.11e-127(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.12e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]