PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g026020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 329aa MW: 37402.8 Da PI: 5.4003

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g026020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.4	1.6e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l +s Csa03g026020.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSLFS 58 79*******************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.338	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.6E-37	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-29	2	82	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.10E-34	2	75	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.9E-25	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SNRLSLFSGK 60 TRIEDVFTRF INLPKQERES AYLPDHSRHP DIQSKECLLR ILQQLKTENE IALQVTKSDL 120 QREVCRLQQQ LQMAEEELRR YEPDPVRFTS MEDYEVCEKQ LLDTLTHVLQ RRDHLLSSHH 180 LSSYEASTMQ QSIAGPFVND VVEGWLPESG HNQAHLFDAS AHSNQLRELS SAMYEPLLQG 240 SSSSSNQNNM SECHVTNHNG EMFPEWAQTY SSSALFASMQ QQQHGGVGPS IDEMMPAQQG 300 DIPAVTTEAQ ADREVSDYET RASQLSSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
1tqe_R	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
1tqe_S	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_A	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_B	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_C	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_D	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_E	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
6c9l_F	3e-17	1	54	1	54	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g026020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056457	0.0	DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010498675.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	0.0	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	R0I2E6	0.0	R0I2E6_9BRAS; Uncharacterized protein
STRING	XP_010498675.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2179	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	0.0	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]