PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g025960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 382aa MW: 43447.6 Da PI: 6.1251 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.9 | 1.2e-09 | 94 | 134 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 +k rr+++NReAAr+sR+RKka +++Lee +L++ ++ Csa03g025960.1 94 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 134 7899*************************987777766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-7 | 85 | 135 | No hit | No description |
SMART | SM00338 | 0.0024 | 87 | 149 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.347 | 93 | 135 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.74E-6 | 95 | 137 | No hit | No description |
Pfam | PF07716 | 2.2E-5 | 95 | 140 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 98 | 113 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.0E-29 | 182 | 256 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEMLSSSSSS TQVETFRDMG MYEPFQQLSG WENPFKSDVN NISNNQSSST TLEVDTRPEA 60 DDNNRANYTS LYNNNSVEAE PSSNNDQDED RINDKMKRRL AQNREAARKS RLRKKAHVQQ 120 LEESRLKLSQ LEQELVRARQ QGLCVRNSSD TSYLGPAGNM NSGIAAFEME YTHWLEEQNK 180 RVSEIRTALQ AHISDIELKM LVDTCLNHYA NLFRMKADAA KADVFFLMSG MWRTSTERFF 240 QWIGGFRPSE LLNVVMPYIE PLTDQQLLAV RNLQQSSQQA EEALSQGLDK LQQGLVESIA 300 VQIKVVDSMN HGAQMASAMD NLQALESFVN QADHLRQQTL QQMSKILTTR QSARGLLALG 360 EYFHRLRALS SLWAARPREH T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00157 | DAP | Transfer from AT1G22070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g025960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATHTAGIA | 0.0 | L10209.1 Arabidopsis thaliana transcription factor mRNA, complete cds. | |||
GenBank | BT026034 | 0.0 | BT026034.1 Arabidopsis thaliana At1g22070 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498670.1 | 0.0 | PREDICTED: transcription factor TGA3-like | ||||
Swissprot | Q39234 | 0.0 | TGA3_ARATH; Transcription factor TGA3 | ||||
TrEMBL | R0GQ99 | 0.0 | R0GQ99_9BRAS; Uncharacterized protein | ||||
STRING | XP_010498670.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3061 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22070.1 | 0.0 | TGA1A-related gene 3 |