PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g025280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 596aa    MW: 66918.5 Da    PI: 4.8036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g025280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.31.7e-1352265953374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ +y+al+++e +   s+e+laa+++++ev+P++kf++l+
  Csa03g025280.1 226 QILISCARALSEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPP---SDERLAAMQVLFEVCPCFKFGFLA 317
                     78*****************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea++gee+vHiiDfdi+qG Q+++L++++a+ p++ p+lR+Tg+++pes+  s   l+ +g rL+++A+  gv+f+f++ v ++++ ++
  Csa03g025280.1 318 ANGAIIEAIKGEEAVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVqrSIGGLSIIGLRLEQLAKDHGVSFKFKA-VPSKTSIVS 411
                     ******************************************************9988899************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++L +kpgE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+fdsl+++lpres+er++v
  Csa03g025280.1 412 PSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFSRFVEAYEYYSAVFDSLDMTLPRESQERMNV 506
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s++++++++ l+++ + + y+++ee g+l ++W++++L+++SaWr
  Csa03g025280.1 507 ERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSSRVTNNIQNLIKQQYCNNYKLKEEMGELHFCWEEKSLIVASAWR 595
                     ************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.733198575IPR005202Transcription factor GRAS
PfamPF035146.0E-133226595IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVEQTVVREH IKARIMSLVR SAEPSSYRNP KLYSLNENVN NIGGVTSAQI FDQDRSKNPC  60
LTDDSYPSQN YEKYFLDSPT DEFVQQHPIG SGASVSSFGS LDSFPYQSRP VLGCSMEFQL  120
PFDSTSTSST RLLGDYQAVS YSPSMDVVEE FDDEQMRSKI QELERALLGD EDDKMVGIDN  180
LMEIDNEWSY QNESEQHQDS PKESSSADSN SHVSSKEVVS QTTPKQILIS CARALSEGKS  240
EEALSMVNEL RQIVSIQGDP SQRIAAYMVE GLAARMAASG KFIYRALKCK EPPSDERLAA  300
MQVLFEVCPC FKFGFLAANG AIIEAIKGEE AVHIIDFDIN QGNQYMTLIR SIAELPGKRP  360
RLRLTGIDDP ESVQRSIGGL SIIGLRLEQL AKDHGVSFKF KAVPSKTSIV SPSTLGCKPG  420
ETLIVNFAFQ LHHMPDESVT TVNQRDELLH MVKSLNPKLV TVVEQDVNTN TSPFFSRFVE  480
AYEYYSAVFD SLDMTLPRES QERMNVERQC LARDIVNIVA CEGEERIERY EAAGKWRARM  540
MMAGFNPKPM SSRVTNNIQN LIKQQYCNNY KLKEEMGELH FCWEEKSLIV ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-5723159425377Protein SCARECROW
5b3h_D8e-5723159425377Protein SCARECROW
5hyz_A6e-572265956375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g025280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankAY0458330.0AY045833.1 Arabidopsis thaliana putative scarecrow 1 protein (At1g21450) mRNA, complete cds.
GenBankAY0966260.0AY096626.1 Arabidopsis thaliana unknown protein (At1g21450) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498602.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLD7KK120.0D7KK12_ARALL; Uncharacterized protein
STRINGXP_010498602.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]