PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g024450.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 853aa MW: 94774.4 Da PI: 5.3859

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g024450.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	562	612	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Csa03g024450.1 562 DKTITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 612 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	551	632	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-25	564	612	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-23	743	840	No hit	No description
SMART	SM00666	1.7E-26	752	835	IPR000270	PB1 domain
PROSITE profile	PS51745	28.83	752	835	IPR000270	PB1 domain
CDD	cd06407	2.38E-43	753	833	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.7E-21	753	832	No hit	No description
Pfam	PF00564	1.1E-19	753	834	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence Send to blast
MEDSFLQTEN AVMDSEFMDG LLLDGCWLET TDGSEFLNVA SSTSSVSPFD PSSFMWSPTQ 60 DASAALCTSG GVVSQMYGQD CVERSSLDDF QWNKRWWIGP GGGGGSSVTE RLVQAVEHIK 120 DYTTERGSLI QLWVPVNRGG KRVLTTKEQP FSHDPMCQRL ANYREISVNY HFSAEQDDSK 180 ALAGLPGRVF LGKLPEWTPD VRFFKSEEYP RVHHAQDCDV RGTLAIPVFE QGSKICLGVI 240 EVVMTTEMVK LRPELESICK ALQAVDLRST ELPISPSLKG CDLSYKAALP EIRKLLRCAC 300 ETHKLPLAQT WVSCLQQNKS GCRHNDENYI HCVSTIDDAC YVGDPTVREF HEACSEHHLL 360 KGQGVAGQAF LTNGPCFSSD VSNYKKSEYP LSHHANMYGL HGAVAIRLRC IHTGSADFVL 420 EFFLPKDCDD LEEQRKMLNA LSTIMAHVPR SLRTVTDKEL EEESEVIERE EIVTPKIENT 480 SELQQLHGNS PWSASLEEIQ RSNNTSNPQN LGLVFDGGDK PNDGFGLKRG FDYTMDSNVN 540 ESSSFSSGGF SMTAEKKRTK ADKTITLDVL RQYFAGSLKD AAKNIGVCPT TLKRICRQHG 600 IQRWPSRKIK KVGHSLQKIQ RVIDSVQGVS GPLPIGSFYA NFPNLVSQSQ EPSQQAKTSP 660 PSAPPPPVQL AKSPVSSYSQ SSNSSQCCSS ETQLNSGATT DPASASVGVS LKKTGSEIEL 720 QSSSLDETIL TLSSLENVPQ GTNLLSSQDD DFLRIKVSYG EEKIRFRMRN SRRLTDLLWE 780 IGKRFSIDDM SRYDLKYLDE DNEWVLLTCD EDVEECVDVC RTTPSHTIKL LLQVSSHHFP 840 ERSSATEYSL WH*

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence Send to blast

MEDSFLQTEN AVMDSEFMDG LLLDGCWLET TDGSEFLNVA SSTSSVSPFD PSSFMWSPTQ  60
DASAALCTSG GVVSQMYGQD CVERSSLDDF QWNKRWWIGP GGGGGSSVTE RLVQAVEHIK  120
DYTTERGSLI QLWVPVNRGG KRVLTTKEQP FSHDPMCQRL ANYREISVNY HFSAEQDDSK  180
ALAGLPGRVF LGKLPEWTPD VRFFKSEEYP RVHHAQDCDV RGTLAIPVFE QGSKICLGVI  240
EVVMTTEMVK LRPELESICK ALQAVDLRST ELPISPSLKG CDLSYKAALP EIRKLLRCAC  300
ETHKLPLAQT WVSCLQQNKS GCRHNDENYI HCVSTIDDAC YVGDPTVREF HEACSEHHLL  360
KGQGVAGQAF LTNGPCFSSD VSNYKKSEYP LSHHANMYGL HGAVAIRLRC IHTGSADFVL  420
EFFLPKDCDD LEEQRKMLNA LSTIMAHVPR SLRTVTDKEL EEESEVIERE EIVTPKIENT  480
SELQQLHGNS PWSASLEEIQ RSNNTSNPQN LGLVFDGGDK PNDGFGLKRG FDYTMDSNVN  540
ESSSFSSGGF SMTAEKKRTK ADKTITLDVL RQYFAGSLKD AAKNIGVCPT TLKRICRQHG  600
IQRWPSRKIK KVGHSLQKIQ RVIDSVQGVS GPLPIGSFYA NFPNLVSQSQ EPSQQAKTSP  660
PSAPPPPVQL AKSPVSSYSQ SSNSSQCCSS ETQLNSGATT DPASASVGVS LKKTGSEIEL  720
QSSSLDETIL TLSSLENVPQ GTNLLSSQDD DFLRIKVSYG EEKIRFRMRN SRRLTDLLWE  780
IGKRFSIDDM SRYDLKYLDE DNEWVLLTCD EDVEECVDVC RTTPSHTIKL LLQVSSHHFP  840
ERSSATEYSL WH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g024450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010498499.1	0.0	PREDICTED: protein NLP4-like isoform X1
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	R0GUM3	0.0	R0GUM3_9BRAS; Uncharacterized protein
STRING	XP_010498499.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein