PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g023700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 904aa MW: 99769.4 Da PI: 6.0064 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.5e-24 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F +++ Csa03g023700.1 156 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAHPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDE 246 99*********************999****997666655..8************************************************..457 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+v+v+r+ Csa03g023700.1 247 KSQLMVGVRRA 257 7778*****97 PP | |||||||
2 | Auxin_resp | 108.8 | 6e-36 | 282 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F ++YnPra+++ Fv++++k++ka+ +++svGmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+ Csa03g023700.1 282 AAHATANRTPFLIFYNPRACPAAFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 365 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.66E-45 | 146 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-41 | 149 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.76E-23 | 155 | 256 | No hit | No description |
SMART | SM01019 | 1.1E-25 | 156 | 258 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.112 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-22 | 156 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.9E-31 | 282 | 365 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.4E-9 | 786 | 880 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.118 | 794 | 878 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.0E-7 | 808 | 873 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 904 aa Download sequence Send to blast |
MMASLACVED KMKTSGFVNG GTTTTISQST LLEEMKLLKD QSGTRKPVIN SELWHACAGP 60 LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD 120 EIYAQMSLQP VHSERDVFPV PDFGLLSRSK HPAEFFCKTL TASDTSTHGG FSVPRRAAEK 180 LFPPLDYTAH PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV 240 LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFYNPRA 300 CPAAFVIPLA KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK 360 WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGETEWGSLI 420 KRPLIRVPDS ANGIMPYTSF PNMASEQLMK MMMRPHNNQN VPSFMSEMQQ NVVMGHGGLL 480 GDMKMQQPCQ PMRMNQKSEM VQPESKLTVN PSASNTSGQE QNLSQGMSGP AKPETSTLSG 540 CTSGRVQHGL EQSVEQVSQV TTATMCNEEK VNQQIQKPAA SSPVQADLDD LSQQIYPPQS 600 DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFMLSSQDSS AVVLPDSTNS PLFHDVWDNQ 660 LNGLKFDQFS PLMQQDLYGS QNMCMSNSTN SNILDPPLSN TVLDDFCAIK ETDFQNHPSS 720 CLVGNNNNSS FAQDVQSQIT SASFADSQAF SRQDFPDNSG GTGTSSSNVD FDDSSLLQNS 780 KGSSWQKVAT PRVRTYTKVQ KTGSVGRSID VTSFKDYEEL KSAIECMFGL EGLLTHPQSS 840 GWKLVYVDYE SDVLLVGDDP WEEFVGCVRC IRILSPTEVQ KMSEEGMKLL NSAGINDLKT 900 SVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 390 | 1 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g023700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334716 | 0.0 | AF334716.1 Arabidopsis thaliana clone C00027 (h) auxin response factor 5 (At1g19850) mRNA, complete cds. | |||
GenBank | BT002050 | 0.0 | BT002050.1 Arabidopsis thaliana transcription factor (At1g19850) mRNA, complete cds. | |||
GenBank | BT008805 | 0.0 | BT008805.1 Arabidopsis thaliana At1g19850 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498407.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | R0GUJ7 | 0.0 | R0GUJ7_9BRAS; Auxin response factor | ||||
STRING | XP_010498407.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |