PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g023160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 473aa    MW: 52906.1 Da    PI: 6.6566
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g023160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822187.74.5e-582934062116
          DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqs 96 
                     +++rkp+w+ErEnn+rRERrRRa+aakiy+GLRaqGny+lpk++DnneVlkALc eAGwvve+DGttyrkg kpl + ++agss++a+p ss ++
  Csa03g023160.1 293 ATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGHKPL-HGDMAGSSSRATPYSSHNQ 386
                     689************************************************************************.******************* PP

          DUF822  97 slkssalaspvesysaspks 116
                     s+ ss++ sp+ sy+  p +
  Csa03g023160.1 387 SPLSSTFDSPILSYQDFPGK 406
                     **************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF567263.4E-15108192IPR002815Spo11/DNA topoisomerase VI subunit A
Gene3DG3DSA:3.40.1360.101.4E-14143192No hitNo description
PRINTSPR015501.6E-8154171IPR002815Spo11/DNA topoisomerase VI subunit A
PRINTSPR015501.6E-8178199IPR002815Spo11/DNA topoisomerase VI subunit A
PfamPF056871.9E-55294408IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000737Biological ProcessDNA catabolic process, endonucleolytic
GO:0005694Cellular Componentchromosome
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
NTNHSFDLNT IPANSDDHDS EYGGLRDDGG YVLAGEETME ADVDPSVKII TSSESTIVIN  60
LNVNPTDESV ADILELHADE LYEENEDHIG DQGANENEET QDHFVGEEGL NVNGNTLAGK  120
KRNYTNGQRW AVYNALLERS VRGNLDIVSL AEYILVVEKE TVFQRLANDM FCKMNRCINI  180
TRRGYPDVST RREEAILMSQ QEGTYSNPRD FVEIKGMHHF DISLLISIFF YLHGICHFVA  240
FQTGQFSLTY KKRTEAMLLK CYLKREMPQW RKKMTSDEAT STSAAAAAAA AMATRRKPSW  300
RERENNRRRE RRRRAVAAKI YTGLRAQGNY NLPKHCDNNE VLKALCSEAG WVVEEDGTTY  360
RKGHKPLHGD MAGSSSRATP YSSHNQSPLS STFDSPILSY QDFPGKASGT GRSDPFMNRG  420
CLLRLSRMPH ISLIRTKVGQ IHRHMTLCGN GLGAKGGEGW HGIGDSQLEL TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-33295377371453Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-33295377371453Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-33295377371453Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-33295377371453Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294313RRKPSWRERENNRRRERRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g023160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1342171e-152AF134217.1 Arabidopsis thaliana 107 protein (107) mRNA, complete cds.
GenBankAY0650411e-152AY065041.1 Arabidopsis thaliana At1g19350/F18O14_4 mRNA, complete cds.
GenBankAY0863401e-152AY086340.1 Arabidopsis thaliana clone 24157 mRNA, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.65e-59BES1 family protein