PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g022830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 310aa    MW: 34504.1 Da    PI: 6.3917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g022830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-1263104346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T eE++l+++ ++ +G++ W +Ia++++ g+t++++k +w++
   Csa03g022830.1  63 SFTSEEEDLIIKMHAAMGSR-WQLIAQHLP-GKTEEEVKMFWNT 104
                      79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-1343113IPR009057Homeodomain-like
PROSITE profilePS5129417.24556110IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-1758110IPR009057Homeodomain-like
SMARTSM007171.9E-1360108IPR001005SANT/Myb domain
CDDcd001677.27E-1063106No hitNo description
PfamPF002492.2E-1163104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVRSCSSKSK NPWANEGETT QKFVFASASK NGSAAYPKKI GLRRCGKSCR VRKTDHSGTK  60
HESFTSEEED LIIKMHAAMG SRWQLIAQHL PGKTEEEVKM FWNTKLKKKL SEMGIDHVTH  120
RPFSHVLAEY GNINGGGNLN PNPSNQGGPL GRNHSLNEDT HQQQPDDSGD LMFHLQAIKR  180
MTESSNQVKP ESTFVYASSS SSNSSPPLFS STCSTIAQEN SEVNFTWSDF LLNQENFHEN  240
QQNHHPQELD NLFGNDFSEV AAATMPNTST IASQIEEETS SNGFVESILA KEKELFLGFP  300
SYLENPFHF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g022830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934660.0AB493466.1 Arabidopsis thaliana At1g18960 mRNA for hypothetical protein, partial cds, clone: RAAt1g18960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498301.10.0PREDICTED: transcription factor MYB35-like
TrEMBLA0A178WJ390.0A0A178WJ39_ARATH; Uncharacterized protein
STRINGXP_010498301.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-164MYB_related family protein