PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g022640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 387aa MW: 44637 Da PI: 6.5684 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.1 | 5.6e-24 | 9 | 54 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 kr e++snrqvt++kR+ngilKKA+ELS+LCd+++ +++fs+tg+ Csa03g022640.1 9 KRLESTSNRQVTYTKRKNGILKKAKELSILCDIDIVLLMFSPTGRA 54 689*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.735 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.31E-27 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-26 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-20 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE 60 HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHDFLGAR NQTIEGLSNQ 120 VAIYQSQLME CHRRLSCWTN IDRIENTEHL SLLEESLRKS IERIQIHKEH YAKNQLLPIE 180 CTTTQFHSGI QLPMAMGGNS NMQEAHSMSW LPDNDNQQTI LPGDSSYLPH REIDGSIPVY 240 TSCFFESIKP EDQICSNPGQ QFEHLEQQGN GCLGLQQLGE EYSYPTPFGS TLGMEDDQEK 300 KIKSEMELNN LQQQHQHQHQ QQQQQQQQLD PSMYDPMAND NSGCFQIPHD QSMFVNDHHH 360 HHHHHHHQNW VPDSMFGQTS YNQQPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-14 | 1 | 92 | 1 | 90 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g022640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY143172 | 0.0 | AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498286.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL65 | ||||
Swissprot | Q7X9I0 | 0.0 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | R0GQ92 | 0.0 | R0GQ92_9BRAS; Uncharacterized protein | ||||
STRING | XP_010498286.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5933 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 0.0 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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